Miyakogusa Predicted Gene

Lj0g3v0128619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128619.1 Non Chatacterized Hit- tr|I1NI37|I1NI37_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,42.21,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL;
THIOREDOXIN,NULL,CUFF.7756.1
         (680 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01680.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator c...   305   6e-83
AT3G01670.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   211   2e-54
AT1G67790.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    96   7e-20

>AT3G01680.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator
           complex subunit Med28 (InterPro:IPR021640); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins
           in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr3:252033-255246 FORWARD
           LENGTH=740
          Length = 740

 Score =  305 bits (781), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 219/708 (30%), Positives = 356/708 (50%), Gaps = 79/708 (11%)

Query: 29  LTLSDDQ--ILEEIYSTHVHSDAKFDVNSLFSVVDNIVERSTRIADNVVQGSHGSPEQTD 86
           L +S D+  +L+ I  TH     +  V  L S+V++I++R+T   D+    +   P  T+
Sbjct: 34  LAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRAT--LDSEDTNASMLPLPTE 91

Query: 87  IKTPSANFTSPLCT----LKQINSELSCKPPGEEIAHETTLAILNKLSTYSWVAKPLLTL 142
            K   ++  S L +    + ++  E++ K      +HE T+++   LS++ W  K +LTL
Sbjct: 92  DKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLTL 151

Query: 143 GAFALEYGEFWFLSLHQQTEPLAKSLAIIKRVPELTKPSSLKTHRNAILEINNLVTATWQ 202
            AFAL YGEFW L        LAKSLA++K VP   +     T  +    +N+L+     
Sbjct: 152 AAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVPVQNR----VTLESVSQGLNDLIREMKS 207

Query: 203 VIKLIFELDNLNLTYDEKDVPSLELALEQIPVDAYWXXXXXXXXXXQIDLLTTNSDKKQ- 261
           V   + EL  L   Y   DVP L   L  IP+  YW          QI+++T    +   
Sbjct: 208 VTACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHEMMN 267

Query: 262 ------ELSQFGQKINIILSKLRKYKQQCEKEIEE---AEYNKILVKLFQTP-TEVIEVL 311
                 E S    K+  I   L +  + C + IE+   +E  K+L  LF T   + +++L
Sbjct: 268 TQMDLWETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTHIDNMKIL 327

Query: 312 KVLFFWKDVPK---TPIYDGATKTLVSIEALKKKDVFLFFSTLDITIEEISIFNPVYDHI 368
             L      PK   TP+ DG TK  V ++ L++K V L  S L+I  +E+SIF  +Y   
Sbjct: 328 TALVH----PKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTES 383

Query: 369 T--------KSKKPHKIVWIPIVE-----EWNDQLKNKFESLKAKMPWYVLQHFAPIKG- 414
                    KS  P+++VW+P+V+     E +  L+ KFE L+  MPWY +     I+  
Sbjct: 384 RRNLVGVDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERH 443

Query: 415 -IKYIKEKWQFKKQPMVVVLSPQGKVQHTNAFHMIQVWGIKGFPFTQDIEVNIGKQIIWI 473
            +++++ +W F  +P++VV+ PQG     NA HMI +WG + FPFT+  E  + ++  + 
Sbjct: 444 VVEFMRGRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFS 503

Query: 474 DSLLVDFGVE--INTWVKEEKYVFIYGGKNKDWIQEFNKLASTFAIELNKEAKIP-IGLF 530
            +L+VD G++  I  W+K + Y+F+YGG + DWI+ F   A   A + N   ++  +G  
Sbjct: 504 LNLIVD-GIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKR 562

Query: 531 N----------LESLQSNIITR----------FWTQVEGLFVTKINKTK----DTVTQQV 566
           N           E ++S  ++           FWT++E +  +KI   K    D V Q +
Sbjct: 563 NHSHREQIRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGI 622

Query: 567 EKLLSYKGETGWALLIKGPFVVAVGHGTTVLKTVAEFEK-WKELVIKKGFEFAFKE-YLD 624
           +K+LSY    GWALL KGP +V + HG  + +T++ +++ WK  V  KG+  A  + + D
Sbjct: 623 KKILSYDKLGGWALLSKGPEIVMIAHG-AIERTMSVYDRTWKTHVPTKGYTKAMSDHHHD 681

Query: 625 KV-SSSLHICSH--LQIPNINGKIPDTIECPECHRTMEVFISYKCCHN 669
           +V   +   C H    I   +G+IP+ + C EC R ME ++S+ CCH+
Sbjct: 682 EVLRETGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCCHD 729


>AT3G01670.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G01680.1); Has 121 Blast hits to 111 proteins
           in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr3:247288-250261 FORWARD
           LENGTH=822
          Length = 822

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 203/727 (27%), Positives = 337/727 (46%), Gaps = 96/727 (13%)

Query: 13  FGGGNKEQPNKAAHNPLTLSDDQIL-EEIYSTHVHSDAKFDVNSLFSVVDNIVERSTRIA 71
           FG G K+  ++      +LSDD+++ + +  TH      FDV SL SVV++I +      
Sbjct: 118 FGPGKKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVPSI 177

Query: 72  DNVVQGSHGSPEQTDIKTPSANFTSPLC---TLKQINSELSCK--PPGE----------- 115
           D+       +P+ + +    A+ TS       + QI+ E+ CK    GE           
Sbjct: 178 DS------SAPKPSLVFKDYADHTSFETFADLIDQISCEIDCKCLHGGESHGMMTSGLHL 231

Query: 116 EIAHETTLAILNKLSTYSWVAKPLLTLGAFALEYGEFWFLSLHQQTEPLAKSLAIIKRVP 175
           +  + TT ++L+ +S Y W AK +L L A A++YG F  L+    T  L KSLA+IK++P
Sbjct: 232 DSRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLP 291

Query: 176 EL-TKPSSL--KTHRNAILEINNLVTATWQVIKLIFELDNLNLTYDEKDVPSLELALEQI 232
            + ++ ++L  +  +  IL + ++V  T  +I  I++L   ++T    D          I
Sbjct: 292 SIFSRQNALHQRLDKTRIL-MQDMVDLTTTIID-IYQLPPNHITAAFTD---------HI 340

Query: 233 PVDAYWXXXXXXXXXXQIDLLTTNSDKK----------QELSQFGQKINI-ILSKLRKYK 281
           P   YW           I   +     +           E S+  +KIN  +L + +K K
Sbjct: 341 PTAVYWIVRCVLICVSHISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSK 400

Query: 282 QQCEKEIEEAEYNKILVKLFQTPTEVIEVLKVLFFWKDVPKTPIYDGA--TKTLVSIEAL 339
              E+ I E EY + L++ F T   V  V  +L   +  P   +Y GA  +K  V I  L
Sbjct: 401 MTIEEGIIEEEYQE-LIQTFTTIIHVDVVPPLLRLLR--PIDFLYHGAGVSKRRVGINVL 457

Query: 340 KKKDVFLFFSTLDITIEEISIFNPVYDHITKSKKPHKIVWIPIVEEWNDQLKNKFESLKA 399
            +K V L  S L+   +E+ I   +Y      ++  +I+W+P+ + W +    KFE+L  
Sbjct: 458 TQKHVLLLISDLENIEKELYILESLY--TEAWQQSFEILWVPVQDFWTEADDAKFEALHM 515

Query: 400 KMPWYVLQHFAPIK--GIKYIKEKWQFKKQPMVVVLSPQGKVQHTNAFHMIQVWGIKGFP 457
            M WYVL     ++   I++++E W FK +P++V L P+G+V  TNAF M+ +W     P
Sbjct: 516 NMRWYVLGEPRKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAHP 575

Query: 458 FTQDIEVNIGKQIIWIDSLLVDFGVEINTW--VKEEKYVFIYGGKNKDWIQEFNKLASTF 515
           FT   E ++  +  W    L+D G + ++   + + KY+ +YGG++  WI+ F  L    
Sbjct: 576 FTTARERDLWSEQEWNLEFLID-GTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNV 634

Query: 516 AIELNKEAKIP--------------IGLFNLESLQSNI-----ITRFWTQVEGLFVTKIN 556
           A   N + ++               I     E+L   +     I  FWT+VE ++ +K  
Sbjct: 635 AKAANIQLEMVYVGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQR 694

Query: 557 ---------------KTKDTVTQQVEKLLSYKGETGWALLI-KGPFVVAVGHGTTVLKTV 600
                          + KD V Q+V  +L Y GE     L+ K   ++    G    + +
Sbjct: 695 MLKAHGIKGREGFKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGL 754

Query: 601 AEFEKWKELVIKKGFEFAFKEYLDKVSSSLHICSHLQIPNINGKIPDTIECPECHRTMEV 660
           AEF +W+  +  KGF  A  ++L  +    H C+   +P   G IP+ +EC EC RTME 
Sbjct: 755 AEFNEWEVNIPTKGFLTALNDHL-LMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEK 813

Query: 661 FISYKCC 667
           +  Y+CC
Sbjct: 814 YYLYQCC 820


>AT1G67790.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins
           in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:25417542-25420099 REVERSE
           LENGTH=576
          Length = 576

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 151/330 (45%), Gaps = 32/330 (9%)

Query: 360 IFNPVYDHI--TKSKKPHKIVWIPI--VEEWNDQLKNKFESLKAKMPWYVLQH--FAPIK 413
           +   +YDH   T +++ ++I+W+PI   ++W D+ K  F+     +PW  ++        
Sbjct: 255 LLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWTDEEKEIFDFYSNSLPWISVRQPWLMSST 314

Query: 414 GIKYIKEKWQFK-KQPMVVVLSPQGKVQHTNAFHMIQVWGIKGFPFTQDIEVNIGKQIIW 472
            + + K++W +K  + M+VV+   G+  + NA  M+ +WG+K +PF+   E  + K+  W
Sbjct: 315 ILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWKEHGW 374

Query: 473 IDSLLVDFGVEINTWVKEEKYVFIYGGKNKDWIQEFNKLAST-----FAIE---LNKEAK 524
             +LL+D G+       E + + I+G +N DWI EF  LA       F +E   L+ + +
Sbjct: 375 SINLLLD-GIHPTF---EGREICIFGSENLDWIDEFVSLARKIQNLGFQLELIYLSNQRR 430

Query: 525 IPIGLFNLESLQSNIITR-FWTQVEGLFVTKINKT------KDTVTQQVEKLL--SYKGE 575
               +     L S  + + FW ++E +  +K+ +        D V ++V  LL   Y   
Sbjct: 431 DERAMEESSILFSPTLQQLFWLRLESIERSKLKRIVIEPSKPDRVFEEVRNLLDFDYGKH 490

Query: 576 TGWALLIKGPFVVAVGHGTTVLKTVAEFEKWKELVIKKGFEFAFKEYLDKVSSSLHICSH 635
            GW ++  G     V  G  + + + +  +W E     GF  A +   +K     H    
Sbjct: 491 RGWGIIGNGSTAETV-DGEKMTERMRKIVRWGEYAKGLGFTEAIEIAAEKPCELSHTAV- 548

Query: 636 LQIPNINGKIPDTIECPECHRTMEVFISYK 665
             +P         + C +C   M+ F++Y+
Sbjct: 549 --VPFEEALTMKVVTCEKCKWPMKRFVAYQ 576