Miyakogusa Predicted Gene

Lj0g3v0128609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128609.1 Non Chatacterized Hit- tr|A5AWI5|A5AWI5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,78,4e-17,no
description,Thioredoxin-like fold; seg,NULL;
Thioredoxin-like,Thioredoxin-like fold; Thioredoxin,,CUFF.7755.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06430.1 | Symbols:  | Thioredoxin superfamily protein | chr5...   218   3e-57

>AT5G06430.1 | Symbols:  | Thioredoxin superfamily protein |
           chr5:1963580-1964251 REVERSE LENGTH=194
          Length = 194

 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 126/199 (63%), Gaps = 21/199 (10%)

Query: 8   KQSLFCLKWPWDEXXXXXXXXXXXXHCNFESPWLFRSLQTLGSIASNFAGXXXXXXXXXX 67
           K   FCLKWPWD              C+F+ PWLFRS+QT+GSIA               
Sbjct: 14  KDPFFCLKWPWDSNKQPKSSSSV---CDFQGPWLFRSMQTIGSIA--------------- 55

Query: 68  XXXLNLDGKMGHRKNLKKVXXXXXXXXXXXXXXRAFASALASGKEATVLEFYSPKCRLCN 127
              L+     G   N +                RAFA+ALAS KEATVLEFYS KCRLCN
Sbjct: 56  ---LSSLTSFGQNPNFRPKKKPLSSSEQGEAEQRAFAAALASQKEATVLEFYSHKCRLCN 112

Query: 128 SLLNFVSEVEARNYNWLNIVMADAENENWLPELLNYDVRYVPCFVLLDNKGRAIAKSGVP 187
           SLL FV EVE RN NWL+I MADAENE W PELL+YDV+YVPCFVLLD  G+A+AK+GVP
Sbjct: 113 SLLKFVLEVEKRNSNWLSITMADAENEKWFPELLHYDVKYVPCFVLLDKNGQALAKTGVP 172

Query: 188 SSRLHVIAGLSHLLKMKRP 206
           SSR HVIAG+SHLLKMKRP
Sbjct: 173 SSRAHVIAGISHLLKMKRP 191