Miyakogusa Predicted Gene

Lj0g3v0128599.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128599.1 Non Chatacterized Hit- tr|D7MH08|D7MH08_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,34.76,1e-17,Nucleic acid-binding proteins,Nucleic acid-binding,
OB-fold-like; N-terminal, heterodimerisation dom,CUFF.7776.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-termi...   276   7e-75
AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-termi...   214   3e-56
AT4G14520.3 | Symbols:  | DNA-directed RNA polymerase II-related...   100   7e-22
AT4G14520.2 | Symbols:  | DNA-directed RNA polymerase II-related...   100   7e-22
AT4G14520.1 | Symbols:  | DNA-directed RNA polymerase II-related...   100   7e-22
AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II | ...    77   7e-15

>AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr4:8406500-8407036 REVERSE LENGTH=178
          Length = 178

 Score =  276 bits (705), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 126/177 (71%), Positives = 151/177 (85%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MFLKVQL WNV+I AEN+    LML+RAIL+ LL  FA+K+ATK+LGY+ AVTTLDK+GE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           GK+R+HTG+VLFPV+F+G+TFK+FKGEI+ GVVHKVLKHGVF+RCGPIE+VYLS  KM D
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIAS 177
           Y+Y PGEN  FMNEK S+I  + T+R VVIG KWME EREFQAL SLEGDYLGP++ 
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSE 177


>AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr3:8115645-8116169 FORWARD LENGTH=174
          Length = 174

 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 133/174 (76%), Gaps = 1/174 (0%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF+KV+L W+V I AE++  G LMLQRAI+IRLL  F+ ++ATKDLGY    T L+ +GE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDTG-LMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 59

Query: 61  GKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMAD 120
           GK+++ TG++ FPVVFNG+ FK+FKGEI+ GVVHKV K GVFL+ GP E +YLS+MKM  
Sbjct: 60  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 119

Query: 121 YRYFPGENAYFMNEKASKIAKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGP 174
           Y + PGEN +FMN+  S+I     +RFVV+ T+W EAE++F AL S++GD LGP
Sbjct: 120 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173


>AT4G14520.3 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF +V+++ +V I A++L   S    + IL RLL D   ++A ++ G++  +T L  +G 
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSP--HQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 58

Query: 61  GKVRQ------HTGDVL-FPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYL 113
            K         H   +L FPV F   TF   +G+IL+G V KVL +G F+R GP+ + YL
Sbjct: 59  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 118

Query: 114 SNMKMADYRYFPG-----ENAYFMNEKASKIAKDVTIRFVVIGTKWMEAER----EFQAL 164
           S +KM  Y Y        E  +F  +  SKIA  V +RF V+  ++ E       ++  L
Sbjct: 119 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 178

Query: 165 VSLEGD-YLGPIA 176
            +LEG+   GPI+
Sbjct: 179 ATLEGNGSFGPIS 191


>AT4G14520.2 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF +V+++ +V I A++L   S    + IL RLL D   ++A ++ G++  +T L  +G 
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSP--HQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 58

Query: 61  GKVRQ------HTGDVL-FPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYL 113
            K         H   +L FPV F   TF   +G+IL+G V KVL +G F+R GP+ + YL
Sbjct: 59  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 118

Query: 114 SNMKMADYRYFPG-----ENAYFMNEKASKIAKDVTIRFVVIGTKWMEAER----EFQAL 164
           S +KM  Y Y        E  +F  +  SKIA  V +RF V+  ++ E       ++  L
Sbjct: 119 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 178

Query: 165 VSLEGD-YLGPIA 176
            +LEG+   GPI+
Sbjct: 179 ATLEGNGSFGPIS 191


>AT4G14520.1 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)

Query: 1   MFLKVQLSWNVIIAAENLQQGSLMLQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGE 60
           MF +V+++ +V I A++L   S    + IL RLL D   ++A ++ G++  +T L  +G 
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSP--HQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 58

Query: 61  GKVRQ------HTGDVL-FPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCGPIEHVYL 113
            K         H   +L FPV F   TF   +G+IL+G V KVL +G F+R GP+ + YL
Sbjct: 59  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 118

Query: 114 SNMKMADYRYFPG-----ENAYFMNEKASKIAKDVTIRFVVIGTKWMEAER----EFQAL 164
           S +KM  Y Y        E  +F  +  SKIA  V +RF V+  ++ E       ++  L
Sbjct: 119 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 178

Query: 165 VSLEGD-YLGPIA 176
            +LEG+   GPI+
Sbjct: 179 ATLEGNGSFGPIS 191


>AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II |
           chr5:23883499-23884976 FORWARD LENGTH=176
          Length = 176

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 25  LQRAILIRLLGDFAAKRATKDLGYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLF 84
           L+  ++ +L+ D     + +  G+  A+T +D +G+G +R  TG V FPV +  V F+ F
Sbjct: 22  LKENLVSKLMKDVEGTCSGRH-GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPF 80

Query: 85  KGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMADYRYFPGENA--YFMNEKASKIAKD 142
           KGEILE VV  V K G F   GP++ +++S   + D   F   +   Y  ++ + KI K+
Sbjct: 81  KGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKE 139

Query: 143 VTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 178
             +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 140 CEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVINDP 173