Miyakogusa Predicted Gene

Lj0g3v0128259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128259.1 Non Chatacterized Hit- tr|A5BCU5|A5BCU5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40.74,2e-16,seg,NULL,CUFF.7720.1
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65710.1 | Symbols:  | unknown protein; INVOLVED IN: N-termin...    59   3e-09

>AT1G65710.1 | Symbols:  | unknown protein; INVOLVED IN: N-terminal
           protein myristoylation; EXPRESSED IN: cultured cell;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G37010.1); Has 2241 Blast hits to 1776
           proteins in 164 species: Archae - 0; Bacteria - 29;
           Metazoa - 1759; Fungi - 94; Plants - 93; Viruses - 17;
           Other Eukaryotes - 249 (source: NCBI BLink). |
           chr1:24437057-24438424 REVERSE LENGTH=455
          Length = 455

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 30/143 (20%)

Query: 1   MGTCLSKKKESSPSTLIAEPNSATPPSKNSSGNGDPLSNPKMGTEP---QANLXXXXXXX 57
           MG CLSKK   SPS     P+S  P         DP+   +   EP   +A         
Sbjct: 1   MGCCLSKK--PSPSL----PSSVKP--------SDPIKPMEPVIEPLEEEAKPKSEKLNQ 46

Query: 58  XXXXXXIFIIKHRKSHDDGGERNSRSQQNAHQPFEEMHDRIAQSPAGA--ANMGVVVRTS 115
                 + +IKH +SH+   ER+ +++ +   P          SP  A  +N   +VR S
Sbjct: 47  EEEEEEVVVIKHTRSHE---ERSKKTESDKDSPV--------SSPVAAEKSNSTPLVRIS 95

Query: 116 SCTKEEVDAILIQCGRLSRNSSG 138
           SCTKEEVDAILIQCG+LSR++S 
Sbjct: 96  SCTKEEVDAILIQCGKLSRSNSA 118