Miyakogusa Predicted Gene

Lj0g3v0128249.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128249.1 tr|H9BZ74|H9BZ74_BIGNA Tic40 OS=Bigelowiella
natans PE=2 SV=1,35,4e-18,seg,NULL; Heat shock chaperonin-binding
motif.,Heat shock chaperonin-binding; UCH37_bd,NULL;
OS12G06,CUFF.7736.1
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16620.1 | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-r...   290   6e-79

>AT5G16620.1 | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-rich
           glycoprotein family protein | chr5:5450808-5454256
           FORWARD LENGTH=447
          Length = 447

 Score =  290 bits (743), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 142/214 (66%), Positives = 164/214 (76%), Gaps = 4/214 (1%)

Query: 95  GFVDVSPEETVQKSPXXXXXXXXXXXXXXXXWVPKEAFQNGTPSNQGVGDSPGSQS---- 150
            F D+SPEET ++SP                 + ++  QNG     G   S   QS    
Sbjct: 234 AFEDISPEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGG 293

Query: 151 ARKSVLSVDALEKMMDDPTVQKMVFPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGG 210
                LSV+ALEKMM+DPTVQKMV+PYLPEEMRNP TFKWML+NPQYRQQL++MLNNM G
Sbjct: 294 KGGPGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSG 353

Query: 211 STEWDGQMMDTLKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPDVAMAFQNPRVQAAIM 270
           S EWD +M DTLKNFDLNSPEVKQQF+QIGL+PEEVISKIM NPDVAMAFQNPRVQAA+M
Sbjct: 354 SGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALM 413

Query: 271 DCSQNPLNIAKYQNDKEVMDVFNKISELFPGVSG 304
           +CS+NP+NI KYQNDKEVMDVFNKIS+LFPG++G
Sbjct: 414 ECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447