Miyakogusa Predicted Gene

Lj0g3v0128209.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128209.1 Non Chatacterized Hit- tr|D7TEX7|D7TEX7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.47,0.000000000000006,seg,NULL,CUFF.7716.1
         (340 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04300.3 | Symbols:  | TRAF-like superfamily protein | chr1:1...    72   4e-13
AT1G04300.2 | Symbols:  | TRAF-like superfamily protein | chr1:1...    72   4e-13
AT1G04300.1 | Symbols:  | TRAF-like superfamily protein | chr1:1...    72   4e-13
AT1G04300.4 | Symbols:  | TRAF-like superfamily protein | chr1:1...    72   4e-13
AT5G43560.2 | Symbols:  | TRAF-like superfamily protein | chr5:1...    63   3e-10
AT5G43560.1 | Symbols:  | TRAF-like superfamily protein | chr5:1...    63   3e-10

>AT1G04300.3 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153895 REVERSE LENGTH=1082
          Length = 1082

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 63  DQVDVERPVDIESLQKEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFG 122
           + VD++RP       KEK++AV         N     Q K E ++  T + +  RK    
Sbjct: 700 NSVDMDRP-------KEKSTAVLSSPRNVAKNPSPLTQTKPEKKSISTADGIPNRKV--- 749

Query: 123 VSQQTDKDASSSFTLATQ---PTAVLKKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPG 179
               T   +SS   L +     T  L+ ++QK S P+    +T     +SRPSSAP++P 
Sbjct: 750 --LATGPPSSSQVVLPSDIQSQTVGLRADMQKLSAPKQPPATT-----ISRPSSAPIIPA 802

Query: 180 GPRPTASVVSLVHQTNPPLARSVSATGRLGPDPSPAT-HSYVPQSYRNAMMGNHV 233
             RP+   VS   QT   L RSVS+ GRLGPDPS     +Y PQSY+NA++GN +
Sbjct: 803 -MRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHNQQTYTPQSYKNAIVGNSL 856


>AT1G04300.2 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153095 REVERSE LENGTH=997
          Length = 997

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 22/175 (12%)

Query: 63  DQVDVERPVDIESLQKEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFG 122
           + VD++RP       KEK++AV         N     Q K E ++  T + +  RK    
Sbjct: 615 NSVDMDRP-------KEKSTAVLSSPRNVAKNPSPLTQTKPEKKSISTADGIPNRKV--- 664

Query: 123 VSQQTDKDASSSFTLATQ---PTAVLKKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPG 179
               T   +SS   L +     T  L+ ++QK S P+          T+SRPSSAP++P 
Sbjct: 665 --LATGPPSSSQVVLPSDIQSQTVGLRADMQKLSAPKQPP-----ATTISRPSSAPIIPA 717

Query: 180 GPRPTASVVSLVHQTNPPLARSVSATGRLGPDPSPAT-HSYVPQSYRNAMMGNHV 233
             RP+   VS   QT   L RSVS+ GRLGPDPS     +Y PQSY+NA++GN +
Sbjct: 718 -MRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHNQQTYTPQSYKNAIVGNSL 771


>AT1G04300.1 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153895 REVERSE LENGTH=1074
          Length = 1074

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 63  DQVDVERPVDIESLQKEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFG 122
           + VD++RP       KEK++AV         N     Q K E ++  T + +  RK    
Sbjct: 692 NSVDMDRP-------KEKSTAVLSSPRNVAKNPSPLTQTKPEKKSISTADGIPNRKV--- 741

Query: 123 VSQQTDKDASSSFTLATQ---PTAVLKKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPG 179
               T   +SS   L +     T  L+ ++QK S P+    +T     +SRPSSAP++P 
Sbjct: 742 --LATGPPSSSQVVLPSDIQSQTVGLRADMQKLSAPKQPPATT-----ISRPSSAPIIPA 794

Query: 180 GPRPTASVVSLVHQTNPPLARSVSATGRLGPDPSPAT-HSYVPQSYRNAMMGNHV 233
             RP+   VS   QT   L RSVS+ GRLGPDPS     +Y PQSY+NA++GN +
Sbjct: 795 -MRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHNQQTYTPQSYKNAIVGNSL 848


>AT1G04300.4 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153895 REVERSE LENGTH=1055
          Length = 1055

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 63  DQVDVERPVDIESLQKEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFG 122
           + VD++RP       KEK++AV         N     Q K E ++  T + +  RK    
Sbjct: 673 NSVDMDRP-------KEKSTAVLSSPRNVAKNPSPLTQTKPEKKSISTADGIPNRKV--- 722

Query: 123 VSQQTDKDASSSFTLATQ---PTAVLKKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPG 179
               T   +SS   L +     T  L+ ++QK S P+    +T     +SRPSSAP++P 
Sbjct: 723 --LATGPPSSSQVVLPSDIQSQTVGLRADMQKLSAPKQPPATT-----ISRPSSAPIIPA 775

Query: 180 GPRPTASVVSLVHQTNPPLARSVSATGRLGPDPSPAT-HSYVPQSYRNAMMGNHV 233
             RP+   VS   QT   L RSVS+ GRLGPDPS     +Y PQSY+NA++GN +
Sbjct: 776 -MRPSPITVSSSVQTTTSLPRSVSSAGRLGPDPSLHNQQTYTPQSYKNAIVGNSL 829


>AT5G43560.2 | Symbols:  | TRAF-like superfamily protein |
           chr5:17501043-17505526 FORWARD LENGTH=1055
          Length = 1055

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 15/156 (9%)

Query: 78  KEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFGVSQQTDKDASSSFTL 137
           KEK++AV         N P+ VQ K E +    VE V  RK    +S ++     +S + 
Sbjct: 678 KEKSAAVLSPSRAAPWNPPSPVQAKPEKKGVSNVEAVPNRKV---ISVKSPSSHHASPSR 734

Query: 138 ATQPTAVL-KKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPGGPRPTASVVSLVHQTNP 196
             Q   V  + +IQK + P+  E+       MSRP SAP++P  P   A V+S V  +  
Sbjct: 735 EAQLQTVGPRADIQKIASPKPVEQP---APPMSRPLSAPIIP--PTQAAPVISAVQTSTA 789

Query: 197 PLARSVSATGRLGPDPSPATHS--YVPQSYRNAMMG 230
            LARS+S+TGRLG   SP THS  Y PQSY++A++G
Sbjct: 790 SLARSMSSTGRLG---SP-THSQAYNPQSYKHAIVG 821


>AT5G43560.1 | Symbols:  | TRAF-like superfamily protein |
           chr5:17501043-17505526 FORWARD LENGTH=1055
          Length = 1055

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 15/156 (9%)

Query: 78  KEKTSAVXXXXXXXXXNLPTSVQMKSEHQTSGTVEPVHVRKASFGVSQQTDKDASSSFTL 137
           KEK++AV         N P+ VQ K E +    VE V  RK    +S ++     +S + 
Sbjct: 678 KEKSAAVLSPSRAAPWNPPSPVQAKPEKKGVSNVEAVPNRKV---ISVKSPSSHHASPSR 734

Query: 138 ATQPTAVL-KKEIQKTSPPRLSEKSTGQGATMSRPSSAPLVPGGPRPTASVVSLVHQTNP 196
             Q   V  + +IQK + P+  E+       MSRP SAP++P  P   A V+S V  +  
Sbjct: 735 EAQLQTVGPRADIQKIASPKPVEQP---APPMSRPLSAPIIP--PTQAAPVISAVQTSTA 789

Query: 197 PLARSVSATGRLGPDPSPATHS--YVPQSYRNAMMG 230
            LARS+S+TGRLG   SP THS  Y PQSY++A++G
Sbjct: 790 SLARSMSSTGRLG---SP-THSQAYNPQSYKHAIVG 821