Miyakogusa Predicted Gene

Lj0g3v0128199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128199.1 tr|B9GN43|B9GN43_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551661 PE=3
SV=1,40.93,6e-18,seg,NULL,CUFF.7715.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60930.1 | Symbols:  | P-loop containing nucleoside triphosph...    60   1e-09

>AT5G60930.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr5:24515398-24522511
            REVERSE LENGTH=1294
          Length = 1294

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 8/89 (8%)

Query: 22   RLLATQGAELLQGALSDRP-AETNSDQAP---RKPLSDIGNTQIKPNL---EQRKKLRKS 74
            ++LA++GA LLQ AL+D+P  ETN D      RKPLSDIGNT  K N+    QRKK +K+
Sbjct: 1131 QVLASRGAMLLQNALADKPEEETNDDGGTRRRRKPLSDIGNTTGKSNVPRPSQRKKWKKT 1190

Query: 75   TIILVSDPPPSSQPEISNVR-IPKKQNIT 102
             + LV   PP+  P  +N   IP+  ++T
Sbjct: 1191 VLQLVPVGPPALPPTHTNTHLIPEANSVT 1219