Miyakogusa Predicted Gene

Lj0g3v0127559.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127559.1 Non Chatacterized Hit- tr|I1K261|I1K261_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,66.3,0,DUF4413,Domain of unknown function DUF4413; seg,NULL;
Ribonuclease H-like,Ribonuclease H-like domain,gene.g9750.t1.1
         (404 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   184   7e-47
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    71   2e-12

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  184 bits (468), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 201/390 (51%), Gaps = 25/390 (6%)

Query: 3   ISGHFVDAGWKLQKRVLSCVKVPSPRCGIDVAGAIFKCLKAWRIENKVFSVSVDNDTYND 62
           I+ H++D+ WK+QK++L+ +    P     ++ A+  C+  W +E K+F+V+ ++   N 
Sbjct: 251 ITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASN- 309

Query: 63  SCLANLKEKLSLSSKVFLGGALFHVRSYLHVLNSLVQDGLSKIEDIIFNIRESMEYINYN 122
           S + N++ +L + +   L G L           SL +D L K +D+I NIR+S++++  +
Sbjct: 310 SAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTS 369

Query: 123 DARLKTFCDVVEQKRLGVRKLL-IDCPTRWNTTFHMLTAALKFKIAFAAYKEREPHYDYA 181
           ++  + F ++ EQ ++   K+L +D  T+WNTT+ ML AA + K  F+     +P Y   
Sbjct: 370 ESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKP 429

Query: 182 PSLEDWDKVEKVCTLLEVFNSSTHVVSGCEYPTASLCLAKVLRVKQLIDNAAKDGDLFMR 241
           PS EDW  VE +CT L+    +   +     P+A     +V + +  +  A    D F+ 
Sbjct: 430 PSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVT 489

Query: 242 EMVAPMKVKFDKYLGECSLLLGVASILDPRCKYHIVDICFPLIYESEEVAKENIKKVRSS 301
            +   M+ K DKY  +CSL+L +A ++DPR K  +V+  F  I+   E A +NIK V   
Sbjct: 490 GIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIF--GEDAGKNIKTVDDG 547

Query: 302 LEELYDEYVXXXXXXXXXXXXXXGVNNPTSSTKPRSSFITGFD-HLMSILHEKEVVPPVK 360
           + EL+ EY+                   T+S   ++  ++ FD ++M    +      +K
Sbjct: 548 IHELFTEYMALPSPQN------------TTSEGGKADGLSDFDTYIMETTGQN-----LK 590

Query: 361 SELQAYLDGCVYVPDVDNNSFSVLEWWRNN 390
           SEL  YLD  + +P V    F VL+WW+ N
Sbjct: 591 SELDQYLDETL-LPRV--QEFDVLDWWKQN 617


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 12/281 (4%)

Query: 1   MVISGHFVDAGWKLQKRVLSCVKVPSPRCGIDVAGAIFKCLKAWRIENKVFSVSVDNDTY 60
           M ++G ++D  W   + +L   ++P P  G ++  ++ K LK + IE+++   + DN   
Sbjct: 221 MSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSEN 280

Query: 61  NDSCLANLKEKLSLSSKVFLGGALFHVRSYLHVLNSLVQDGLSKIEDIIFNIRESMEYIN 120
                 +LKE      KV       ++      LN ++ +GL+ I+ II  +RE  + +N
Sbjct: 281 AIHACHSLKEYFD-GQKVL---PFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELN 336

Query: 121 YNDARLKTFCDVVEQKRLGVRKLLIDCPTRWNTTFHMLTAALKFKIAF-AAYKEREPHYD 179
            +      F  +    + G  KL ID  +RW+  + M+    K   +  +  ++ E   +
Sbjct: 337 ASTELSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALE 396

Query: 180 YAPSLEDWDK--VEKVCTLLEV--FNSSTHVVSGCEYPTASLCLAKVLRVKQLIDNAAKD 235
               L   +K  V  V   L++  F+ +T+ +   +  T  L L  +  + ++I    K 
Sbjct: 397 NRMMLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKS 456

Query: 236 --GDLFMREMVAPMKVKFDKYLGE-CSLLLGVASILDPRCK 273
                ++R     M  K   Y  + C++   + +ILDPR K
Sbjct: 457 CHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIK 497