Miyakogusa Predicted Gene

Lj0g3v0127549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127549.1 CUFF.7678.1
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40470.1 | Symbols:  | RNI-like superfamily protein | chr5:16...   256   3e-68
AT4G15475.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    60   2e-09
AT5G23340.1 | Symbols:  | RNI-like superfamily protein | chr5:78...    59   1e-08
AT5G01720.1 | Symbols:  | RNI-like superfamily protein | chr5:26...    55   1e-07
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1...    51   2e-06
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch...    49   6e-06
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr...    49   6e-06
AT5G27920.1 | Symbols:  | F-box family protein | chr5:9942063-99...    49   8e-06

>AT5G40470.1 | Symbols:  | RNI-like superfamily protein |
           chr5:16208255-16209745 REVERSE LENGTH=496
          Length = 496

 Score =  256 bits (653), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 172/385 (44%), Positives = 239/385 (62%), Gaps = 15/385 (3%)

Query: 88  VSSCCSQLRALRFLTGPVSLRSINSLANSCTHLSSLCISLSRPIF--LRWVLEFPCLKDL 145
           +SSCC  LR L FL  PVS  S+  L+ S +  S   I L +P      W+  F  LK+L
Sbjct: 117 ISSCCFNLRNLCFLINPVSSSSLVPLSTSLSLTSLS-IELWKPQNSGFTWIALFSSLKEL 175

Query: 146 SIVLCSGDENGSSHEDEVNGQFGVWESDDVDAELGLESLCFVGIRGDDWGLGWLWKSCRK 205
           SI +CS          +      V        ELGLES+   GI+ DD  + WLWKSCRK
Sbjct: 176 SIHVCSTSSPAFDFYPKSKPNPEV-------VELGLESVSLFGIQPDDNDVTWLWKSCRK 228

Query: 206 LKKLRLQSCQGIGGSYSCFVQCLQGVREIELRTCRSVVDGVLLKLAENSHSLNSLLVHDG 265
           LKKL L+SC  IG        CL+ + EIELRTCRS+VD VLLK++E   SL SLL+HDG
Sbjct: 229 LKKLSLRSCGSIGEEIGL---CLKNLEEIELRTCRSIVDVVLLKVSEICESLKSLLIHDG 285

Query: 266 GSREGLLHFFS--QCRSXXXXXXXXXXXXXXXXXXSAVAVNFRNLSSLRLQSCCLVTGEG 323
           GS++GL+ F S  +C                     ++A NF+ LS+LRL SC  VTG  
Sbjct: 286 GSKDGLVQFMSNARCYDTLERLDLRLPMDLTDDHLVSLAANFKCLSTLRLTSCIFVTGFS 345

Query: 324 LKAIAIATSNGLEELALINCDVVEREPGLLATLGQHLRQLRKLDLSHNEMLLDKELISML 383
           LKA+A++ S+ LEEL+L++C+ +ERE GLLAT+GQHL +LRKLDL+ NE L DKE++SML
Sbjct: 346 LKALALSFSSSLEELSLLSCNAIERERGLLATIGQHLGRLRKLDLTRNEWLFDKEVVSML 405

Query: 384 VSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRR 443
            SC  L+++ LR CK +T A +V++ ++C +L+ +D++ C  IE + +E FV  +  L++
Sbjct: 406 ASCNGLVEVVLRDCKHLTGAVLVALNKNCVKLKTLDILGCRLIEPDDVEGFVMKTQCLKK 465

Query: 444 MEVEESKLSDAAKMWASNKFIEVVV 468
           + VEE+++++A    AS+KFIE VV
Sbjct: 466 LVVEENQITEAILKLASSKFIETVV 490


>AT4G15475.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr4:8845927-8848701 FORWARD LENGTH=610
          Length = 610

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 40/265 (15%)

Query: 195 GLGWLWKSCRKLKKLRLQSCQGIGGSYSCFVQCLQGVREIE---LRTCRSVVDGVLLKLA 251
           G+  + KSC +LK+L L  CQ IG S     +  +G + +E   L  C  + D  +  +A
Sbjct: 363 GIEAIGKSCPRLKELALLYCQRIGNSA--LQEIGKGCKSLEILHLVDCSGIGDIAMCSIA 420

Query: 252 ENSHSLNSLLV---HDGGSREGLLHFFSQCRSXXXXXXXXXXXXXXXXXXSAVAVNFRNL 308
           +   +L  L +   ++ G++ G++     C+S                           L
Sbjct: 421 KGCRNLKKLHIRRCYEIGNK-GIISIGKHCKS---------------------------L 452

Query: 309 SSLRLQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATLGQHLRQLRKLDL 368
           + L L+ C  V  + L  IAI     L++L +  C+ +  + G+ A + +   QL  LD+
Sbjct: 453 TELSLRFCDKVGNKAL--IAIGKGCSLQQLNVSGCNQIS-DAGITA-IARGCPQLTHLDI 508

Query: 369 SHNEMLLDKELISMLVSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIES 428
           S  + + D  L  +   C  L DL L  C  IT   +  +++ CK LE   M+ C GI S
Sbjct: 509 SVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITS 568

Query: 429 EAIELFVKNSSRLRRMEVEESKLSD 453
             +   V +   ++++ +E+ K+++
Sbjct: 569 AGVATVVSSCPHIKKVLIEKWKVTE 593



 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 22/270 (8%)

Query: 185 CFVGIRGDDWGLGWLWKSCRKLKKLRLQSCQGIG--GSYSCFVQCLQGVREIELRTCRSV 242
           C+VG    D GL  + K C++L++L L+ C+G+   G     V C + ++ I +     +
Sbjct: 176 CYVG----DQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKI 231

Query: 243 VD------GVLLKLAENSHSLNSLLVHDGGSREGLLHFFSQCRSXXXXXXXXXXXXXXXX 296
            D      G   KL E  + L+S  +HD    +GL+     C                  
Sbjct: 232 TDLSLEAVGSHCKLLEVLY-LDSEYIHD----KGLIAVAQGCHR--LKNLKLQCVSVTDV 284

Query: 297 XXSAVAVNFRNLSSLRLQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATL 356
             +AV     +L  L L S    T +G++AI    S  L++L L +C  V  +   L  +
Sbjct: 285 AFAAVGELCTSLERLALYSFQHFTDKGMRAIG-KGSKKLKDLTLSDCYFVSCKG--LEAI 341

Query: 357 GQHLRQLRKLDLSHNEMLLDKELISMLVSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLE 416
               ++L +++++    +  + + ++  SC  L +L L  C+ I ++A+  + + CK LE
Sbjct: 342 AHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLE 401

Query: 417 NVDMMQCLGIESEAIELFVKNSSRLRRMEV 446
            + ++ C GI   A+    K    L+++ +
Sbjct: 402 ILHLVDCSGIGDIAMCSIAKGCRNLKKLHI 431


>AT5G23340.1 | Symbols:  | RNI-like superfamily protein |
           chr5:7856314-7857983 FORWARD LENGTH=405
          Length = 405

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 11/245 (4%)

Query: 193 DWGLGWLWKSCRKLKKLRLQSCQGIGGS-YSCFVQCLQGVREIELRTCRSVVDGVLLKLA 251
           D  L  + +  + L+ L L +C+GI  +  +   +CL  ++ +++  CR + D  L  +A
Sbjct: 87  DSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVA 146

Query: 252 ENSHSLNSLLVHDGGSR----EGLLHFFSQCRSXXXXXXXXXXXXXXXXXXSAVAVNFRN 307
           E  H L +L  H  G R    E L     +CR                     V    R 
Sbjct: 147 EGCHDLRAL--HLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVK-GCRK 203

Query: 308 LSSLRLQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATLGQHLRQLRKLD 367
           + SL +  C  V   G+ ++A A ++ L+ L L++C  V  E   +++L Q  + L  L 
Sbjct: 204 IKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNES--ISSLAQFCKNLETLI 261

Query: 368 LSHNEMLLDKELISMLVSCVN-LIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGI 426
           +     + D+ ++ +  SC + L +LR+  C  I+ +++  +L+ CK LE +D+  C  +
Sbjct: 262 IGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIGCCEEV 321

Query: 427 ESEAI 431
              A 
Sbjct: 322 TDTAF 326


>AT5G01720.1 | Symbols:  | RNI-like superfamily protein |
           chr5:267118-270391 REVERSE LENGTH=665
          Length = 665

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 316 CCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGL----LATLGQHLRQLRKLDLSHN 371
           C  +T +GL  I +  SN L EL L       R  G+    ++T+ Q    L  +++S+ 
Sbjct: 441 CLNITDKGLSYIGMGCSN-LRELDLY------RSVGITDVGISTIAQGCIHLETINISYC 493

Query: 372 EMLLDKELISMLVSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAI 431
           + + DK L+S L  C  L     RGC  ITS  + ++   CKRL  VD+ +C  I    +
Sbjct: 494 QDITDKSLVS-LSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGL 552

Query: 432 ELFVKNSSRLRRMEVEESKLSDAAKMWASN 461
                 S  L+++ V ++ +++   +  +N
Sbjct: 553 LALAHFSQNLKQINVSDTAVTEVGLLSLAN 582


>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
           chr2:10848018-10850275 REVERSE LENGTH=628
          Length = 628

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 79/147 (53%), Gaps = 4/147 (2%)

Query: 310 SLRLQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATLGQHLRQLRKLDLS 369
           S+R  +   V+  GL++I  +  + L  L+L N   +  + GLL  + +   QL KL+L+
Sbjct: 155 SIRGSNSAKVSDLGLRSIGRSCPS-LGSLSLWNVSTIT-DNGLL-EIAEGCAQLEKLELN 211

Query: 370 HNEMLLDKELISMLVSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESE 429
               + DK L+++  SC NL +L L  C  I    ++++ RSC +L++V +  C  +  +
Sbjct: 212 RCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQ 271

Query: 430 AIELFVKNSS-RLRRMEVEESKLSDAA 455
            I   + N++  L +++++   ++D +
Sbjct: 272 GIASLLSNTTCSLAKLKLQMLNVTDVS 298


>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
           chr1:28940888-28942401 FORWARD LENGTH=360
          Length = 360

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 344 DVVEREPGLLATLGQHLRQLRKLDLSHNEMLLDKELISMLVSCVNLIDLRLRGCKGITSA 403
           D  + E   +  +  H  +L+ LDLS +  + D  L S+   C NL  L L GC   +  
Sbjct: 100 DKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDT 159

Query: 404 AMVSMLRSCKRLENVDMMQCL-GIESEAIELFVKNSSRLRRMEV 446
           A+  + R C++L+ +++  C+  +    ++   +N ++L+ + +
Sbjct: 160 ALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 203


>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
           protein | chr1:28940888-28942401 FORWARD LENGTH=360
          Length = 360

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 344 DVVEREPGLLATLGQHLRQLRKLDLSHNEMLLDKELISMLVSCVNLIDLRLRGCKGITSA 403
           D  + E   +  +  H  +L+ LDLS +  + D  L S+   C NL  L L GC   +  
Sbjct: 100 DKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDT 159

Query: 404 AMVSMLRSCKRLENVDMMQCL-GIESEAIELFVKNSSRLRRMEV 446
           A+  + R C++L+ +++  C+  +    ++   +N ++L+ + +
Sbjct: 160 ALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 203


>AT5G27920.1 | Symbols:  | F-box family protein |
           chr5:9942063-9944507 REVERSE LENGTH=642
          Length = 642

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 299 SAVAVNFRNLSSLRLQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATLGQ 358
           SAVA + RNL +L+L+SC L+T +GL+++    S  ++EL L +C  V        +   
Sbjct: 370 SAVAQSCRNLGTLKLESCHLITEKGLQSLG-CYSMLVQELDLTDCYGVNDRGLEYISKCS 428

Query: 359 HLRQLRKLDLSHNEMLLDKELISMLVSCVNLIDLRLRGCKGITSAAMVSMLRSCKRLENV 418
           +L++L KL L  N  + DK +  +   C  L++L L  C G     + ++ R CK L  +
Sbjct: 429 NLQRL-KLGLCTN--ISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRL 485

Query: 419 DMMQCLGIESEAIE 432
            +  C  +    +E
Sbjct: 486 ILSYCCELTDTGVE 499