Miyakogusa Predicted Gene

Lj0g3v0127239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127239.1 Non Chatacterized Hit- tr|Q6Z2Y3|Q6Z2Y3_ORYSJ
Putative uncharacterized protein OJ1008_C03.26-2
OS=Or,73.08,6e-16,seg,NULL,CUFF.7659.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24630.5 | Symbols: BIN4 | double-stranded DNA binding | chr5...   134   6e-32
AT5G24630.1 | Symbols: BIN4 | double-stranded DNA binding | chr5...   130   1e-30
AT5G24630.4 | Symbols: BIN4 | double-stranded DNA binding | chr5...   130   1e-30
AT5G24630.3 | Symbols: BIN4 | double-stranded DNA binding | chr5...   130   1e-30
AT5G24630.2 | Symbols: BIN4 | double-stranded DNA binding | chr5...   130   1e-30
AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding | chr5...   130   1e-30

>AT5G24630.5 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=446
          Length = 446

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 86/105 (81%), Gaps = 4/105 (3%)

Query: 218 DNDGDVEAAEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVG 276
           D D D   AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVG
Sbjct: 240 DTDTDTIIAEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVG 299

Query: 277 RIIISDAPSGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           R+++SD  +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 300 RVVVSDT-TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 341


>AT5G24630.1 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=451
          Length = 451

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%), Gaps = 4/97 (4%)

Query: 226 AEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAP 284
           AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVGR+++SD  
Sbjct: 253 AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT- 311

Query: 285 SGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 312 TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 346


>AT5G24630.4 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=450
          Length = 450

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%), Gaps = 4/97 (4%)

Query: 226 AEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAP 284
           AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVGR+++SD  
Sbjct: 252 AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT- 310

Query: 285 SGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 311 TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 345


>AT5G24630.3 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=450
          Length = 450

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%), Gaps = 4/97 (4%)

Query: 226 AEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAP 284
           AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVGR+++SD  
Sbjct: 252 AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT- 310

Query: 285 SGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 311 TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 345


>AT5G24630.2 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=432
          Length = 432

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%), Gaps = 4/97 (4%)

Query: 226 AEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAP 284
           AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVGR+++SD  
Sbjct: 234 AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT- 292

Query: 285 SGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 293 TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 327


>AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding |
           chr5:8432523-8435682 REVERSE LENGTH=454
          Length = 454

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%), Gaps = 4/97 (4%)

Query: 226 AEEETFEKLVEPNV-SSSMLPLMLSEKVHRTKALIECQGDSIDLSGDMGAVGRIIISDAP 284
           AEE T ++ ++P+  SSS LPL+LSEKV+RTK L+EC+GDSIDLSGDMGAVGR+++SD  
Sbjct: 256 AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT- 314

Query: 285 SGDKEMCLDLKGTIYKTSIVPCRTFCVVSFGQSEAKV 321
           +GD  M LDLKGTIYK++I+P RTFCVV+ GQ+EAK+
Sbjct: 315 TGD--MYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKI 349