Miyakogusa Predicted Gene

Lj0g3v0126989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126989.1 Non Chatacterized Hit- tr|B9FBZ9|B9FBZ9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.34,1e-16,seg,NULL; Patched,Patched; NIEMANN-PICK C1,NULL;
PATCHED-RELATED,NULL; SSD,Sterol-sensing domain,CUFF.7670.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G42470.1 | Symbols:  | Patched family protein | chr1:15926987...    53   5e-08

>AT1G42470.1 | Symbols:  | Patched family protein |
           chr1:15926987-15935128 FORWARD LENGTH=1272
          Length = 1272

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 30/33 (90%), Gaps = 1/33 (3%)

Query: 26  TADIITILVSYIVMFAYISVTLGDTPPRLSSFY 58
           TAD+ITI +SY+VMFAYIS+TLGD+ PRL SFY
Sbjct: 594 TADVITIAISYLVMFAYISLTLGDS-PRLKSFY 625