Miyakogusa Predicted Gene

Lj0g3v0126969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126969.1 tr|G7KK50|G7KK50_MEDTR Alanyl-tRNA synthetase
(Fragment) OS=Medicago truncatula GN=MTR_6g045600
PE=3,94.85,0,tRNA-synt_2c,Alanyl-tRNA synthetase, class IIc,
N-terminal; SUBFAMILY NOT NAMED,Alanine-tRNA ligase,,CUFF.7668.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50200.2 | Symbols: ALATS | Alanyl-tRNA synthetase | chr1:185...   191   7e-50
AT1G50200.1 | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | chr...   191   1e-49
AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synt...    74   2e-14

>AT1G50200.2 | Symbols: ALATS | Alanyl-tRNA synthetase |
           chr1:18591429-18598167 REVERSE LENGTH=963
          Length = 963

 Score =  191 bits (486), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 88/97 (90%), Positives = 94/97 (96%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTS+LQNKMSNYDTDVF+PIFD IQ ATGARPYSGKVGP+D D+VDMAYRVVADH
Sbjct: 247 MGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADH 306

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYG+E+
Sbjct: 307 IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEI 343


>AT1G50200.1 | Symbols: ALATS, ACD | Alanyl-tRNA synthetase |
           chr1:18591429-18598311 REVERSE LENGTH=1003
          Length = 1003

 Score =  191 bits (485), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/97 (90%), Positives = 94/97 (96%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADH 60
           MGFERLTS+LQNKMSNYDTDVF+PIFD IQ ATGARPYSGKVGP+D D+VDMAYRVVADH
Sbjct: 295 MGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADH 354

Query: 61  IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYG+E+
Sbjct: 355 IRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEI 391


>AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA
           synthetase, class IIc | chr5:7616221-7619961 REVERSE
           LENGTH=978
          Length = 978

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 10/99 (10%)

Query: 1   MGFERLTSILQNKMSNYDTDVFLPIFDAI-QLATGARPYSGKVGPDDA-DKVDMAYRVVA 58
           +G ER+  ILQ   +NY+TD+  PI   I +LA         +  D A DK   + +V+A
Sbjct: 299 LGLERIAQILQKVPNNYETDLIYPIIAKISELAN--------ISYDSANDKAKTSLKVIA 350

Query: 59  DHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREV 97
           DH+R + + I+DG  P N GR YV+RR++RRAVR G+ +
Sbjct: 351 DHMRAVVYLISDGVSPSNIGRGYVVRRLIRRAVRKGKSL 389