Miyakogusa Predicted Gene

Lj0g3v0126949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126949.1 Non Chatacterized Hit- tr|I1M638|I1M638_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,83.19,0,NIEMANN-PICK C1,NULL; PATCHED-RELATED,NULL;
seg,NULL,CUFF.7666.1
         (582 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38350.1 | Symbols:  | Patched family protein | chr4:17958324...   751   0.0  
AT4G38350.2 | Symbols:  | Patched family protein | chr4:17958324...   737   0.0  
AT1G42470.1 | Symbols:  | Patched family protein | chr1:15926987...   684   0.0  

>AT4G38350.1 | Symbols:  | Patched family protein |
           chr4:17958324-17966846 REVERSE LENGTH=1273
          Length = 1273

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/577 (62%), Positives = 440/577 (76%), Gaps = 4/577 (0%)

Query: 7   AIISVGFLLQVLILSWF-SPSLTAAQISRSIHSNEYCAMYDICGQRSDGKVLNCPYPSPS 65
           AI +   LLQ+   S   + +LT ++ S + HS EYCAMYDICG RSDGKVLNCPY SPS
Sbjct: 2   AIPTKLLLLQLFTFSLLLTANLTHSEPSNNRHSKEYCAMYDICGHRSDGKVLNCPYASPS 61

Query: 66  VKPHDLLSAKIQSLCPTITGNVCCTEEQFDTLRVQVQQAVPILVGCPACLRNFLNLFCEL 125
           ++P +L SAKIQSLCPTI+GNVCCTE QFDTLR QVQQAVP LVGCPACLRNFLNLFCEL
Sbjct: 62  IQPDELFSAKIQSLCPTISGNVCCTETQFDTLRSQVQQAVPFLVGCPACLRNFLNLFCEL 121

Query: 126 SCSPNQSLFINVTSISQVDGNMTVDGIDLYVTETFGEGLYSACKDVKFGTMNTRAIDFVG 185
           SCSPNQSLFINVTS+++V GN+TVDGID ++T+TFGEGLY +CK+VKFGTMNTRAI+FVG
Sbjct: 122 SCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNTRAINFVG 181

Query: 186 AGANNYKEWFAFLGQKVPPGFPGSPYSIDFKTTILDSSPMELMNASVYSCNDTSLGXXXX 245
            GA N++EWF F+GQK P GFPGSPY+I+FK++I +SS M  MN SVYSC DTSLG    
Sbjct: 182 GGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDTSLGCSCG 241

Query: 246 XXXXXXXXXXXXXXXXXXXXX-XIKMGSLKVRCVDLSLAVLYIVLVFVLFGWIXXXXXXX 304
                                  I++G LKVRC++LS+A++Y++LV   FGW        
Sbjct: 242 DCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYVLLVSCFFGWAGLNRRRN 301

Query: 305 XXXXGSSAEPLLVSEGRSFTNLPKDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAA 364
                 S++PLL        N      +L +  QR    Q S +Q +++ FYR+YG W A
Sbjct: 302 TTQPLDSSKPLLHPVEEDGINSEMKENILGVKVQRH--AQLSPVQRYMAKFYRSYGSWIA 359

Query: 365 RRPTIVLCSSLAIVILLCFGLLRFNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQ 424
           R P++VL  S+AIV+ LC GL  F VETRPEKLWVGPESKAAEEK+FFD+HL+PFYRIEQ
Sbjct: 360 RNPSLVLFMSVAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKKFFDTHLSPFYRIEQ 419

Query: 425 LIIATLPESEHGKPPSIVTDDNIELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCA 484
           LI+AT+P+ + G+ PSIVTD+NI LLF+IQ+KVD+IR NYSG  VSL DICLKPLGEDCA
Sbjct: 420 LILATVPDPKSGRAPSIVTDENILLLFDIQQKVDQIRGNYSGSEVSLPDICLKPLGEDCA 479

Query: 485 TQSILQYFQMDPDNFDNYGGVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYS 544
           TQSILQYF+MD   FD+YGGVEHAEYCFQHYTS+ETC SAF+AP++P+  LGGFSGNNYS
Sbjct: 480 TQSILQYFKMDSGTFDDYGGVEHAEYCFQHYTSSETCLSAFQAPVDPSAVLGGFSGNNYS 539

Query: 545 EASAFIITYPVNNALTKVGDENGKAIAWEKAFIQLAK 581
           EA+AF++TYPVNN +    +EN +A+AWEK+FIQLAK
Sbjct: 540 EATAFVVTYPVNNVIGDSSNENARAVAWEKSFIQLAK 576


>AT4G38350.2 | Symbols:  | Patched family protein |
           chr4:17958324-17966846 REVERSE LENGTH=1297
          Length = 1297

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/601 (60%), Positives = 440/601 (73%), Gaps = 28/601 (4%)

Query: 7   AIISVGFLLQVLILSWF-SPSLTAAQISRSIHSNEYCAMYDICGQRSDGKVLNCPYPSPS 65
           AI +   LLQ+   S   + +LT ++ S + HS EYCAMYDICG RSDGKVLNCPY SPS
Sbjct: 2   AIPTKLLLLQLFTFSLLLTANLTHSEPSNNRHSKEYCAMYDICGHRSDGKVLNCPYASPS 61

Query: 66  VKPHDLLSAKIQSLCPTITGNVCCTEEQFDTLRVQVQQAVPILVGCPACLRNFLNLFCEL 125
           ++P +L SAKIQSLCPTI+GNVCCTE QFDTLR QVQQAVP LVGCPACLRNFLNLFCEL
Sbjct: 62  IQPDELFSAKIQSLCPTISGNVCCTETQFDTLRSQVQQAVPFLVGCPACLRNFLNLFCEL 121

Query: 126 SCSPNQSLFINVTSISQVDGNMTVDGIDLYVTETFGEGLYSACKDVKFGTMNTRAIDFVG 185
           SCSPNQSLFINVTS+++V GN+TVDGID ++T+TFGEGLY +CK+VKFGTMNTRAI+FVG
Sbjct: 122 SCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNTRAINFVG 181

Query: 186 AGANNYKEWFAFLGQKVPPGFPGSPYSIDFKTTILDSSPMELMNASVYSCNDTSLG-XXX 244
            GA N++EWF F+GQK P GFPGSPY+I+FK++I +SS M  MN SVYSC DTSLG    
Sbjct: 182 GGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDTSLGCSCG 241

Query: 245 XXXXXXXXXXXXXXXXXXXXXXXIKMGSLKVRCVDLSLAVLYIVLVFVLFGWIXXXXXXX 304
                                  I++G LKVRC++LS+A++Y++LV   FGW        
Sbjct: 242 DCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYVLLVSCFFGWAGLNRRRN 301

Query: 305 XXXXGSSAEPLLVSEGRSFTNLPKDGEVLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAA 364
                 S++PLL        N      +L +  QR    Q S +Q +++ FYR+YG W A
Sbjct: 302 TTQPLDSSKPLLHPVEEDGINSEMKENILGVKVQRH--AQLSPVQRYMAKFYRSYGSWIA 359

Query: 365 RRPTIVLCSSLAIVILLCFGLLRFNVETRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQ 424
           R P++VL  S+AIV+ LC GL  F VETRPEKLWVGPESKAAEEK+FFD+HL+PFYRIEQ
Sbjct: 360 RNPSLVLFMSVAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKKFFDTHLSPFYRIEQ 419

Query: 425 LIIATLPESEHGKPPSIVTDDNIELLFEIQEKVDEIRANYSGLLVSLSDICLKPLGEDCA 484
           LI+AT+P+ + G+ PSIVTD+NI LLF+IQ+KVD+IR NYSG  VSL DICLKPLGEDCA
Sbjct: 420 LILATVPDPKSGRAPSIVTDENILLLFDIQQKVDQIRGNYSGSEVSLPDICLKPLGEDCA 479

Query: 485 TQSILQYFQMDPDNFDNYGGVEHAEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYS 544
           TQSILQYF+MD   FD+YGGVEHAEYCFQHYTS+ETC SAF+AP++P+  LGGFSGNNYS
Sbjct: 480 TQSILQYFKMDSGTFDDYGGVEHAEYCFQHYTSSETCLSAFQAPVDPSAVLGGFSGNNYS 539

Query: 545 E------------------------ASAFIITYPVNNALTKVGDENGKAIAWEKAFIQLA 580
           E                        A+AF++TYPVNN +    +EN +A+AWEK+FIQLA
Sbjct: 540 EVMVSELGCSVPFDCYSDVKRTLFQATAFVVTYPVNNVIGDSSNENARAVAWEKSFIQLA 599

Query: 581 K 581
           K
Sbjct: 600 K 600


>AT1G42470.1 | Symbols:  | Patched family protein |
           chr1:15926987-15935128 FORWARD LENGTH=1272
          Length = 1272

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/551 (60%), Positives = 406/551 (73%), Gaps = 7/551 (1%)

Query: 37  HSNEYCAMYDICGQRSDGKVLNCPYPSPSVKPHDLLSAKIQSLCPTITGNVCCTEEQFDT 96
            S  YCAMYDICG RSDGKVLNCP+  PSVKP DLLS+KIQSLCPTITGNVCCTE QFDT
Sbjct: 14  QSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTITGNVCCTETQFDT 73

Query: 97  LRVQVQQAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISQVDGNMTVDGIDLYV 156
           LR QVQQA+P +VGCPACLRNFLNLFCEL+CSP+QSLFINVTS ++V  N TVDGI  Y+
Sbjct: 74  LRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKNNSTVDGIQYYI 133

Query: 157 TETFGEGLYSACKDVKFGTMNTRAIDFVGAGANNYKEWFAFLGQKVPPGFPGSPYSIDFK 216
           T+ FG G+Y +CK+VKFG+ N+RA+DF+GAGA N+KEWF F+GQK     PGSPY I F 
Sbjct: 134 TDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAGVNLPGSPYGIAFL 193

Query: 217 TTILDSSPMELMNASVYSCNDTSLGXXXXXX-XXXXXXXXXXXXXXXXXXXXIKMGSLKV 275
            T   SS M  MN S+YSC D SLG                           IK+GSL+V
Sbjct: 194 PTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQKKHSCSIKIGSLEV 253

Query: 276 RCVDLSLAVLYIVLVFVLFGWIXXXXXXXXXXXGSSAEPLLVSEGRSFTNLPK----DGE 331
           +CVD  LA+LYIVLV +  G                      S  R+  N  K      +
Sbjct: 254 KCVDFILAILYIVLVSLFLGGGLLHPVRGKKKTSQMGTLSEASGERNSVNQQKPDTIQSQ 313

Query: 332 VLVIDPQRQNEVQYSFIQEWLSNFYRAYGRWAARRPTIVLCSSLAIVILLCFGLLRFNVE 391
           +L   PQR N  Q S +Q  L+NFY  YG W AR PT+VLC S+++V+LLC GL+RF VE
Sbjct: 314 MLQNTPQR-NWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVLLLCVGLIRFKVE 372

Query: 392 TRPEKLWVGPESKAAEEKEFFDSHLAPFYRIEQLIIATLPESEHGKPPSIVTDDNIELLF 451
           TRP+KLWVG  S+AAEEK+FFD+HLAPFYRIEQLIIAT+  S H K P I+TDDNI+LLF
Sbjct: 373 TRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAPEILTDDNIKLLF 432

Query: 452 EIQEKVDEIRANYSGLLVSLSDICLKPLGEDCATQSIL-QYFQMDPDNFDNYGGVEHAEY 510
           +IQ+KVD +RAN+SG +VSL+DIC+KPLGEDCATQS+L QYF+M P+N+D+YGGV+H +Y
Sbjct: 433 DIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYGGVDHVKY 492

Query: 511 CFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFIITYPVNNALTKVGDENGKAI 570
           CF+H+TSTE+C SAFK PL+PTTALGGFSGN++SEASAF++TYPV+N +   G++  KA+
Sbjct: 493 CFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKGNKTEKAV 552

Query: 571 AWEKAFIQLAK 581
           AWEKAFIQLAK
Sbjct: 553 AWEKAFIQLAK 563