Miyakogusa Predicted Gene

Lj0g3v0126919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126919.1 Non Chatacterized Hit- tr|A5ADR4|A5ADR4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,60.32,0.000000000003,seg,NULL,CUFF.7636.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27390.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   164   4e-41

>AT4G27390.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:13703417-13704655 REVERSE LENGTH=235
          Length = 235

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 4/134 (2%)

Query: 110 RLWGNIAVAIGLTYLSFTGQLGWILDAXXXXXXXXXXXXXXGLGAFLWWAGRDIMQGTCP 169
           R+ GN+A+AIGLTYLS TGQLGWILDA              GLGAF WWA RDI+Q  CP
Sbjct: 96  RILGNLALAIGLTYLSMTGQLGWILDAIVSVWLIVVIVPILGLGAFFWWAQRDIVQSNCP 155

Query: 170 NCGNDFQVFKSTLNDDLQLCPYCGQPFSVVGNEFVKDSVKFSNQSTTFGQAFNNFSRSSN 229
           NCGN+FQ+FKS ++D++QLCP+C QPFSVV ++FVK+ VKFSNQ+T FGQ  N FS S  
Sbjct: 156 NCGNEFQIFKSAMDDEVQLCPFCTQPFSVVDDKFVKEPVKFSNQTTAFGQDLNGFS-SKP 214

Query: 230 EKDSGRA---IDVE 240
           +K  G +   +D+E
Sbjct: 215 KKGKGSSTAVVDIE 228