Miyakogusa Predicted Gene

Lj0g3v0126879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126879.1 Non Chatacterized Hit- tr|I3SQ61|I3SQ61_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,86.61,0,coiled-coil,NULL; 60S RIBOSOMAL PROTEIN L30-LIKE
PROTEIN,NULL; 60S RIBOSOMAL PROTEIN L24,Ribosomal p,CUFF.7632.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein ...   147   3e-36
AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein ...   147   3e-36
AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L...    51   2e-07
AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:153...    50   4e-07

>AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein |
           chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 86/119 (72%)

Query: 13  GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
           GHGIQFVRNDAKIFRF RSKCHKNFKMKRNPRKVKWTKA+R  HGK+MT+  TFEFE+KR
Sbjct: 16  GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKR 75

Query: 73  NRPERYDRNVKEDVLXXXXXXXXXXXSREETHHKKMKQGKNEKQRREAEKELKQGINMV 131
           NRPERYDRNV E+ L           +RE  H +   +   +K+  +  KEL Q I+MV
Sbjct: 76  NRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMV 134


>AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein |
           chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 86/119 (72%)

Query: 13  GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
           GHGIQFVRNDAKIFRF RSKCHKNFKMKRNPRKVKWTKA+R  HGK+MT+  TFEFE+KR
Sbjct: 16  GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKR 75

Query: 73  NRPERYDRNVKEDVLXXXXXXXXXXXSREETHHKKMKQGKNEKQRREAEKELKQGINMV 131
           NRPERYDRNV E+ L           +RE  H +   +   +K+  +  KEL Q I+MV
Sbjct: 76  NRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMV 134


>AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein
          L24e family protein | chr3:19660749-19661912 REVERSE
          LENGTH=163
          Length = 163

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K+    Q     R+R
Sbjct: 18 GRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAA--QEAVKRRRR 75

Query: 73 NRPERYDRNV 82
             + Y R++
Sbjct: 76 ATKKPYSRSI 85


>AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 |
          chr2:15350548-15351819 REVERSE LENGTH=164
          Length = 164

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 13 GHGIQFVRNDAKIFRFYRSKCHKNFKMKRNPRKVKWTKAYRRVHGKEMTRIQTFEFERKR 72
          G GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H K+    Q     R+R
Sbjct: 18 GRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAA--QEAVKRRRR 75

Query: 73 NRPERYDRNV 82
             + Y R++
Sbjct: 76 ATKKPYSRSI 85