Miyakogusa Predicted Gene

Lj0g3v0126039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126039.1 tr|B9GWI4|B9GWI4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_554365 PE=4
SV=1,45.45,9e-19,seg,NULL,CUFF.7565.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11570.2 | Symbols:  | Haloacid dehalogenase-like hydrolase (...    55   1e-08
AT4G11570.1 | Symbols:  | Haloacid dehalogenase-like hydrolase (...    55   1e-08

>AT4G11570.2 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr4:7004743-7005864 FORWARD
           LENGTH=373
          Length = 373

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 1   MVESMAATSLLGHRPICEGNLIRDVSGKRKSFNSCCRFPAVEFLGGRIVVAQPLPKSKHG 60
           M E++ A SL+GHRP      +++    +KS  S  RFP       + V++  + +S   
Sbjct: 1   MAEAIGAVSLVGHRPSIVRITVKNELKTQKS-QSIVRFPVKVDYSAKGVLSHLMTQSVK- 58

Query: 61  XXXXXXXXXIKALAVELTREAHSYQEERLPEKDXXXXXXXXKIDSGFDPRPSLWPPANR 119
                    I+ALA+ELT+E    +++RLP+           +DSG D +PSLWPP N+
Sbjct: 59  -KNRMSVFPIRALAMELTKEKK--KDDRLPK-------TWNYLDSGADDKPSLWPPENK 107


>AT4G11570.1 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr4:7004743-7005864 FORWARD
           LENGTH=373
          Length = 373

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 1   MVESMAATSLLGHRPICEGNLIRDVSGKRKSFNSCCRFPAVEFLGGRIVVAQPLPKSKHG 60
           M E++ A SL+GHRP      +++    +KS  S  RFP       + V++  + +S   
Sbjct: 1   MAEAIGAVSLVGHRPSIVRITVKNELKTQKS-QSIVRFPVKVDYSAKGVLSHLMTQSVK- 58

Query: 61  XXXXXXXXXIKALAVELTREAHSYQEERLPEKDXXXXXXXXKIDSGFDPRPSLWPPANR 119
                    I+ALA+ELT+E    +++RLP+           +DSG D +PSLWPP N+
Sbjct: 59  -KNRMSVFPIRALAMELTKEKK--KDDRLPK-------TWNYLDSGADDKPSLWPPENK 107