Miyakogusa Predicted Gene

Lj0g3v0125989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0125989.1 Non Chatacterized Hit- tr|C6TAS9|C6TAS9_SOYBN
Putative uncharacterized protein OS=Glycine max PE=4
S,54,1e-18,seg,NULL,NODE_28994_length_478_cov_114.376572.path1.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23330.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   115   7e-27
AT4G23330.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    99   7e-22

>AT4G23330.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 17 plant
           structures; EXPRESSED DURING: 9 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF2365
           (InterPro:IPR019314). | chr4:12192136-12193383 FORWARD
           LENGTH=147
          Length = 147

 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 36  FNQNEIFRAIEIVERDSFAIAQSFTSLFASLRLALSQSTTTSLHHINSFTHASARLQESV 95
            NQ EI + +  VE+DS AIA+SF+SLF SLR  LS++T +S+ H+  F  A+ RLQE+ 
Sbjct: 36  LNQGEILKTLATVEKDSQAIAESFSSLFVSLRSTLSEATGSSVDHMACFGEAAGRLQENA 95

Query: 96  LDAATKGNRYINSCLRLNEEMKNIDGLASQL 126
           LDAATKGNRYINSCLRLNEE+K ++ LA++L
Sbjct: 96  LDAATKGNRYINSCLRLNEEIKGVENLAARL 126


>AT4G23330.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: eukaryotic translation initiation factor 3A
           (TAIR:AT4G11420.1); Has 63 Blast hits to 55 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi
           - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:12192136-12194745 FORWARD
           LENGTH=270
          Length = 270

 Score = 99.0 bits (245), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query: 36  FNQNEIFRAIEIVERDSFAIAQSFTSLFASLRLALSQSTTTSLHHINSFTHASARLQESV 95
            NQ EI + +  VE+DS AIA+SF+SLF SLR  LS++T +S+ H+  F  A+ RLQE+ 
Sbjct: 36  LNQGEILKTLATVEKDSQAIAESFSSLFVSLRSTLSEATGSSVDHMACFGEAAGRLQENA 95

Query: 96  LDAATKGNRYINSCLRL 112
           LDAATKGNRYINSCLRL
Sbjct: 96  LDAATKGNRYINSCLRL 112