Miyakogusa Predicted Gene

Lj0g3v0125429.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0125429.1 Non Chatacterized Hit- tr|D7KKK6|D7KKK6_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,46.9,5e-19,
,CUFF.7516.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10095.1 | Symbols:  | Protein prenylyltransferase superfamil...    93   3e-20

>AT1G10095.1 | Symbols:  | Protein prenylyltransferase superfamily
           protein | chr1:3297478-3300353 REVERSE LENGTH=420
          Length = 420

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 20/116 (17%)

Query: 14  LLHQLEDILESDALIDELGFIHPSQFSVLNEESGVSTNLSDEAIHQSTNSLPSSEGCSKQ 73
           LL Q E +LESD LIDE+GFIHPSQF++L++E+G S            N    + G S +
Sbjct: 14  LLKQFEHVLESDPLIDEVGFIHPSQFTMLDKEAGFS------------NEFQPNNGTSSK 61

Query: 74  ENLYFWNRDHKLGISTRAIVPLYRAAKHAFMTTLNQYRKCGKQSD----KVVSCLP 125
               FWN+DHKLGIST  +V L + AKH F+  L +Y+  G   D    K +SC P
Sbjct: 62  ----FWNQDHKLGISTDILVQLCKDAKHVFLLALQEYKSHGNACDESQIKNISCSP 113