Miyakogusa Predicted Gene

Lj0g3v0125289.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0125289.2 tr|G7L0K5|G7L0K5_MEDTR Nuclear pore complex
protein Nup205 OS=Medicago truncatula GN=MTR_7g099880
PE,84.86,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
DUF3414,Protein of unknown function DUF34,CUFF.7507.2
         (1539 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51200.1 | Symbols:  | Protein of unknown function (DUF3414) ...  2035   0.0  

>AT5G51200.1 | Symbols:  | Protein of unknown function (DUF3414) |
            chr5:20804926-20819408 FORWARD LENGTH=1838
          Length = 1838

 Score = 2035 bits (5273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1002/1529 (65%), Positives = 1222/1529 (79%), Gaps = 35/1529 (2%)

Query: 1    MVSPKHLLSTLESVLLAPTPPTAAQRVELFHAIRSSLHSFQSLLSYPPPKPSDRSQVQSK 60
            MVSPK L++ + S LL  + PT  QR+EL HAIR+S  S Q+LLS+PPPKPSDR+QVQSK
Sbjct: 1    MVSPKDLVAIVHSSLLGTSRPTPTQRIELTHAIRNSFPSLQNLLSFPPPKPSDRAQVQSK 60

Query: 61   SIRLPDSPPISLDDQDVQIALKLSDDLHLNEVDCVRLLVSANQEWGLMGREPLEILRLAA 120
             IRLPDS PISLDDQD+ I+LKLSD+LHLNE+D VRLLVS+NQEWGLMGR+PLEI RLA 
Sbjct: 61   EIRLPDSLPISLDDQDIAISLKLSDELHLNEIDSVRLLVSSNQEWGLMGRDPLEIQRLAT 120

Query: 121  GLWYTERRDLITSLHLLLRAVVLDQGLEDDVLVDIQKYLEDLINSGLRQRLISLIKELNR 180
            GLWYT RRDL ++L+ LLRAVVLD+GLE D++ DIQ  LE+LI +GLRQRLI+LIKELNR
Sbjct: 121  GLWYTGRRDLTSTLYTLLRAVVLDEGLEPDLIADIQGLLEELIEAGLRQRLITLIKELNR 180

Query: 181  EEPSGFGGPQCERYIIDSRGSLVERLAVVSRERLILGHCLVLSILVVRTSPKDVKDIFSV 240
            E+P+G GGP CERY+IDSRG+LVER AVV RERLILGHCLVLSILV R   KDVKDI+ +
Sbjct: 181  EDPTGLGGPLCERYLIDSRGALVERRAVVQRERLILGHCLVLSILVDRPGSKDVKDIYYI 240

Query: 241  LKDSASEVSESIAPVKYQITFSLLFAVVIAFISDGLSTVPDKASVLSSNASFRHEFHELV 300
            LKD+A++++E    +  QITFSLLF+++I F+SD +S + DK+S++S +ASFR +F ++V
Sbjct: 241  LKDNAAQLTEGNDTISSQITFSLLFSLIITFVSDAISRLSDKSSMISQDASFRTDFQDIV 300

Query: 301  MAAGNDPIVEGFVGGIRLAWAVRLMLIQDGVAARETVSSGSSNEMGYLSQCLEVIFSNNN 360
            MA+G+DP  +GF+GGIRLAWAV LMLI DG++  +T+S+ S+ +MG++  CLE IFS N 
Sbjct: 301  MASGSDPTADGFIGGIRLAWAVHLMLIHDGISGMDTISTASTTDMGHICSCLESIFSKNV 360

Query: 361  FQFLLDKVLRTAAYQTEDEDMVYMYNAYLHKLITCFLSNPLARDKIKESKEKIMSVLSPY 420
            FQFLLD VLRTAAYQ ++ED++Y+YNAYLHKL +CFLS+P+ARDK+KESK+  MSVL+ Y
Sbjct: 361  FQFLLDNVLRTAAYQNDEEDIIYIYNAYLHKLASCFLSHPIARDKVKESKDMAMSVLNSY 420

Query: 421  RSVGTHDFAQDSNSSSLHGTEMGSIPFNSILDFVSEIYQKEPELLSGNDVLWTFVNFAGE 480
            R+    D +  +  S         +PF S+++F      KEPELLSGNDVLWTFVNFAGE
Sbjct: 421  RTSDPLDGSMQTEESD------RPLPFISLMEF------KEPELLSGNDVLWTFVNFAGE 468

Query: 481  DHTNFRTLVAFLNMLSTLASSQEGASKVYELLQNKSFRSIGWSTLFECLTIYDEKFKQSL 540
            DHTNF+TLVAFL ML TLAS+QEGASKVYELL+  SFRSIGW TLF+C+ IYDEKFKQSL
Sbjct: 469  DHTNFKTLVAFLEMLCTLASTQEGASKVYELLRGTSFRSIGWPTLFDCIRIYDEKFKQSL 528

Query: 541  QTAGAMLPEIQEGDAKALVAYLNVLKKVVENGNPIEKKNWFPDIEPLFKLLSYENVPPYL 600
            QTAGAM+PE  EGDAKALVAYLNVL+KVVENGNP E+KNWFPDIEP FKLL YEN+PPYL
Sbjct: 529  QTAGAMMPEFLEGDAKALVAYLNVLQKVVENGNPTERKNWFPDIEPFFKLLGYENIPPYL 588

Query: 601  KGALRNAIATFIHVSPVLKDSIWTYLEQYDLPVVVGPDVQNTPSVGTQVYDMQFELNEIE 660
            KGALR  IA F++V P ++DSIW +LEQYDLPVVVG  V  +    +QVYDMQFELNE+E
Sbjct: 589  KGALRKTIAAFVNVFPEMRDSIWAFLEQYDLPVVVGSQVGKSDQ-SSQVYDMQFELNEVE 647

Query: 661  ARREQYPSTISFLNLINALIAEERDLTDXXXXXXXXXXXXYDHVFGPFPQRAYTDTCEKW 720
            ARREQYPSTISFLNLINALIA E+D+ D                     +RAY+D CEKW
Sbjct: 648  ARREQYPSTISFLNLINALIAGEKDVNDRG-------------------RRAYSDPCEKW 688

Query: 721  QLVGACLKHFHMILSMYDIKDEDYEGVVDQSRLSTTKESSPLQTQLPVLELMKDFMSGKT 780
            QLV ACL+HFHMILSMYDI++ED +G  +      + E+S LQTQLP++EL+KDFMSGK 
Sbjct: 689  QLVVACLQHFHMILSMYDIQEEDLDGFTEHPHFLVSLETSSLQTQLPIIELLKDFMSGKA 748

Query: 781  AFRNIMSILLLGVNSIIAERSSQIYGQHLENAVQLSLEIIILVLEKDLLLSDYWRPLYQP 840
             +RN+M IL +GVNSII+ER S+ YG+ LE AVQLSLEI++LV EKDLL+SD WRPLYQP
Sbjct: 749  LYRNLMGILQVGVNSIISERLSKTYGKILEKAVQLSLEILLLVFEKDLLVSDVWRPLYQP 808

Query: 841  LDIILSHDHNQIVALLEYVRYDFQPKVQQSSIKIMSIF-SSRMVGLVQLLLKSNASNSLI 899
            LDIILS DHNQI+ALLEYVRYD  P++Q+SSIKIM+I   SR+VGLV +L+K +A+NSLI
Sbjct: 809  LDIILSQDHNQIIALLEYVRYDSLPQIQRSSIKIMNILRCSRLVGLVPMLIKIDAANSLI 868

Query: 900  EDYAACLELRSEESQKVENN-NDSGILIMQLLIDNIGRPAPNITHLLLKFDIDTPVERTV 958
            EDYAACLE R EE + VEN+ +D G+LIMQLL+DNI RPAP+ITHLLLKFD+D PVE TV
Sbjct: 869  EDYAACLEGRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPSITHLLLKFDLDAPVEGTV 928

Query: 959  LQPKFYYSCMKVVLDILEKLSKPDVNALLHEFGFQLFYELCVDPLTCFPTMDLLSNKKYQ 1018
            LQPKF+YSC+KV+L++LEKL  PD+N LL EFGFQL  EL +DPLT  PTMDLLS+KKYQ
Sbjct: 929  LQPKFHYSCLKVILEMLEKLPNPDINFLLFEFGFQLLCELNLDPLTSGPTMDLLSSKKYQ 988

Query: 1019 FFVKHLDTIGIAPLPKRNSNQPLRISSLHQRAWILKLLAVELHAGDVSSSKHREACQTIL 1078
            FF++HLDTIG+A LPKR+ +Q LRISSLHQRAW+LKLLA+ LH G  SSS H EACQ+IL
Sbjct: 989  FFLQHLDTIGVATLPKRSGSQALRISSLHQRAWLLKLLAIALHTGSGSSSAHLEACQSIL 1048

Query: 1079 SHLYGQGITEIGGGQAISQFSLQGASENAAIRTVSKSKVLELLEIIQFRCPDSTTKLSNV 1138
            SHL+G+ +TE       S    Q   + A   ++SKSK L LLEI+QFR PD++ +L  +
Sbjct: 1049 SHLFGREVTEAANEPFSSSTYPQDGLDYAGTSSISKSKALALLEILQFRSPDASMQLPQI 1108

Query: 1139 VAGMKYDLLPEDILGNPGNSGNG-VYYYSERGDRLIDLASFHDKLWLKYNSAYQHGSNLG 1197
            V+ +KYD L EDILGN   S +G +YYYSERGDRLIDL+SF +KLW K +S +    +  
Sbjct: 1109 VSSLKYDSLVEDILGNRDTSVSGSIYYYSERGDRLIDLSSFSNKLWQKLHSGFPLVDSFP 1168

Query: 1198 SDIELNDVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEVSASRRLTMLEDRSEI 1257
            +  EL++VRETIQQLL+WGWKYN+NLEEQAAQLHML  WSQIVEVSA RR++ L++RSEI
Sbjct: 1169 NVAELSEVRETIQQLLKWGWKYNRNLEEQAAQLHMLAGWSQIVEVSACRRISSLDNRSEI 1228

Query: 1258 LFQVXXXXXXXXXXXXXXXKMAFILSQVALTCMAKLRDERFMFPGSLSSDNITCIDLIVV 1317
            L+++               KMAF+L+QVALTC+AKLRD+RF F G+LSSD +TC+D+++V
Sbjct: 1229 LYRILDASLSASASPDCSLKMAFVLTQVALTCIAKLRDDRFSFQGALSSDTVTCLDVMMV 1288

Query: 1318 KQLSNGACLTILFKLIMAIXXXXXXXXXXXXQYALLLSYFQYCLNVVDPDVPTSVLQFLL 1377
            K LS GAC ++LFKL+MAI            QYALLLSYFQYC +++  DVPTSV+QFLL
Sbjct: 1289 KHLSTGACHSVLFKLVMAILRHESSESLRRRQYALLLSYFQYCQHMIALDVPTSVVQFLL 1348

Query: 1378 LNEQDSEHIDLPKIDNEQAELARANFSTLRKEAQSILDLVVKDATHGSEPGKTIALYVLD 1437
            LNEQD E +D+ KID EQA+LARANF  ++KEAQ ILDLV+KDA+ GSE GKTI+LYVL+
Sbjct: 1349 LNEQDGEDLDIQKIDKEQADLARANFFIIKKEAQGILDLVIKDASQGSEFGKTISLYVLE 1408

Query: 1438 GLICIDHERYFLSQLQSRGFLRSCFTAISSVSNQDGGLSLDSLQRACTFEAELALLLRIS 1497
             L+CIDHERYFLSQLQSRGF+RSC  +IS++S QDG   L+S QRACT EAELALLLRIS
Sbjct: 1409 ALVCIDHERYFLSQLQSRGFIRSCLGSISNISYQDGTHLLESQQRACTLEAELALLLRIS 1468

Query: 1498 HKYGKSGAQVLFSMGIFEHLASGRAINLQ 1526
            HKYGKSG QVLFSMG  EH+AS RAI+ +
Sbjct: 1469 HKYGKSGGQVLFSMGALEHIASCRAISFK 1497