Miyakogusa Predicted Gene

Lj0g3v0123959.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123959.1 tr|B6UF44|B6UF44_MAIZE DNA binding protein OS=Zea
mays PE=4 SV=1,56.52,2e-18,no description,Helix-loop-helix domain;
coiled-coil,NULL; seg,NULL; HLH,Helix-loop-helix domain;
HLH,CUFF.7444.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1...   119   4e-28
AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-b...   118   8e-28
AT3G47710.1 | Symbols: BNQ3, BHLH161 | BANQUO 3 | chr3:17590729-...   107   2e-24
AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   107   2e-24
AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic helix-loop-he...   102   5e-23
AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 | chr5:4921487-4...    95   9e-21

>AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged
          BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
          chr1:27998298-27998668 REVERSE LENGTH=93
          Length = 93

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 73/77 (94%), Gaps = 1/77 (1%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRE-RRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          I++DQI+DL+ KLQQLLPE+R+ RRSDKVSA++VLQ+TCNYIR+LHREVDDLSERLSELL
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76

Query: 76 ATTDTAQAAIIRNLLMQ 92
          A +DTAQAA+IR+LL Q
Sbjct: 77 ANSDTAQAALIRSLLTQ 93


>AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH)
          DNA-binding superfamily protein | chr1:9351571-9352474
          FORWARD LENGTH=94
          Length = 94

 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 69/74 (93%), Gaps = 2/74 (2%)

Query: 19 DDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATT 78
          DDQI DLVSKLQ L+PE+R RRSDKVSASKVLQETCNYIR+LHREVDDLS+RLSELLA+T
Sbjct: 19 DDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLAST 78

Query: 79 D--TAQAAIIRNLL 90
          D  +A+AAIIR+LL
Sbjct: 79 DDNSAEAAIIRSLL 92


>AT3G47710.1 | Symbols: BNQ3, BHLH161 | BANQUO 3 |
          chr3:17590729-17591455 FORWARD LENGTH=92
          Length = 92

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 69/77 (89%), Gaps = 1/77 (1%)

Query: 17 ITDDQIHDLVSKLQQLLPEI-RERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          ITD+QI+DLV +L +LLPE+   RRS KVSAS+VLQETC+YIR+L +EVDDLSERLS+LL
Sbjct: 16 ITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLL 75

Query: 76 ATTDTAQAAIIRNLLMQ 92
           +TD+AQAA+IR+LLMQ
Sbjct: 76 ESTDSAQAALIRSLLMQ 92


>AT3G28857.1 | Symbols:  | basic helix-loop-helix (bHLH)
          DNA-binding family protein | chr3:10855781-10856313
          REVERSE LENGTH=92
          Length = 92

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 68/78 (87%), Gaps = 3/78 (3%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERR-SDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          I+DDQ+ DLVSKL+Q LPEI ERR SDKVSASKVLQETCNYIR LHREVD+LS+RLS+LL
Sbjct: 15 ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLL 74

Query: 76 ATT--DTAQAAIIRNLLM 91
           +   D+ +AA+IR+LLM
Sbjct: 75 DSVDEDSPEAAVIRSLLM 92


>AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic
          helix-loop-helix (bHLH) DNA-binding family protein |
          chr5:15957689-15958303 FORWARD LENGTH=92
          Length = 92

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 69/78 (88%), Gaps = 3/78 (3%)

Query: 17 ITDDQIHDLVSKLQQLLPEIRERR-SDKVSASKVLQETCNYIRSLHREVDDLSERLSELL 75
          I+D+Q+ DLVSKL+Q+LPEI +RR SDK SASKVLQETCNYIR+L+REVD+LSERLS+LL
Sbjct: 15 ISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLL 74

Query: 76 ATT--DTAQAAIIRNLLM 91
           +   D+ +AA+IR+LLM
Sbjct: 75 ESVDEDSPEAAVIRSLLM 92


>AT5G15160.1 | Symbols: BNQ2, BHLH134 | BANQUO 2 |
          chr5:4921487-4922553 REVERSE LENGTH=94
          Length = 94

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 65/75 (86%), Gaps = 3/75 (4%)

Query: 19 DDQIHDLVSKLQQLLPEIRE-RRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLAT 77
          DDQI DL+SKL+Q +PEIR+ RRS+ VSASKVLQETCNYIR+L++E DDLS+RL++LL +
Sbjct: 18 DDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLES 77

Query: 78 TD--TAQAAIIRNLL 90
           D  + QAA+IR+L+
Sbjct: 78 IDPNSPQAAVIRSLI 92