Miyakogusa Predicted Gene

Lj0g3v0123849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123849.1 Non Chatacterized Hit- tr|I1MZS3|I1MZS3_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,47.52,2e-19,
,CUFF.7437.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase (rev...    71   2e-13
AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protei...    65   1e-11
AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse t...    54   2e-08

>ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase
          (reverse transcriptase)-related family protein |
          chrM:90883-91347 REVERSE LENGTH=154
          Length = 154

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 1  MPKGVVKQCKEIMTRFLWGGSEEERKVAWVSWKQLCKPK-SPGGLGIRDLEWFNLALLGK 59
          + K + K+    MT F W   E +RK++WV+W++LCK K   GGLG RDL WFN ALL K
Sbjct: 13 LSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAK 72

Query: 60 WRWRLMHERDQLWCKVLFAKY 80
            +R++H+   L  ++L ++Y
Sbjct: 73 QSFRIIHQPHTLLSRLLRSRY 93


>AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protein
          | chr4:14333528-14335255 FORWARD LENGTH=575
          Length = 575

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 1  MPKGVVKQCKEIMTRFLWGGSEEERKVAWVSWKQLCKPKSPGGLGIRDLEWFNLALLGKW 60
          +PK V KQ   ++  F W   +E + + W +W  L   K+ GG+G +D+E FNLALLGK 
Sbjct: 13 LPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQ 72

Query: 61 RWRLMHERDQLWCKVLFAKY 80
           WR++   + L  KV  ++Y
Sbjct: 73 MWRMLSRPESLMAKVFKSRY 92


>AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           chr3:8789471-8793208 FORWARD LENGTH=746
          Length = 746

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 1   MPKGVVKQCKEIMTRFLWGGSEEERKVAWVSWKQLCKPKSPGGLGIRDLEWFNLA----- 55
           +P   +K+   I + FLW G E   K A V+W  +C PK  GGLGIR L+  N       
Sbjct: 87  LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSI 146

Query: 56  ----LLGKWRWR 63
                LG W W+
Sbjct: 147 SGNTTLGSWMWK 158