Miyakogusa Predicted Gene

Lj0g3v0123809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123809.1 Non Chatacterized Hit- tr|D7THJ5|D7THJ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,57.33,3e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
DUF3475,Protein of unknown function DUF3475;
seg,NU,NODE_72202_length_630_cov_51.706348.path1.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23160.1 | Symbols:  | Protein of unknown function (DUF668) |...   133   3e-32
AT5G04550.1 | Symbols:  | Protein of unknown function (DUF668) |...    58   1e-09
AT5G51670.1 | Symbols:  | Protein of unknown function (DUF668) |...    49   6e-07
AT5G08660.1 | Symbols:  | Protein of unknown function (DUF668) |...    47   3e-06

>AT3G23160.1 | Symbols:  | Protein of unknown function (DUF668) |
           chr3:8260059-8261654 REVERSE LENGTH=531
          Length = 531

 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 85/116 (73%)

Query: 1   MVAEAWIVKMGNQVSSNLKHALLLENLTKRKQSHKKSDTKETIGILSFEVANVMSKTVHL 60
           MV+EAWIVKM NQVSSNLKHALLLE+ + +K     S  K+TIGILSFEVANVMSKT+HL
Sbjct: 1   MVSEAWIVKMRNQVSSNLKHALLLESSSTKKTPKPVSLPKQTIGILSFEVANVMSKTIHL 60

Query: 61  HKSLSESEISKLRNEILNSEGVNNLVSSXXXXXXXXXXXXXXXXXNRVASVVSRLG 116
           H+SLS++EISKL+ E+ +SEGV  LVSS                 +RVASVVSRLG
Sbjct: 61  HRSLSDTEISKLKAEVFHSEGVRKLVSSDENHLLDLSVSEKLDDLSRVASVVSRLG 116


>AT5G04550.1 | Symbols:  | Protein of unknown function (DUF668) |
          chr5:1303757-1305556 REVERSE LENGTH=599
          Length = 599

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query: 24 LENLTKRKQSHKKSDTKETIGILSFEVANVMSKTVHLHKSLSESEISKLRNEILNSEGVN 83
            NL +  + H     K  +G+L+FEVA+++SK VHL +SLS+  +++LR+EI +S G+ 
Sbjct: 7  FRNLWRFPKKHDGHKDKAVLGVLAFEVASLLSKLVHLWQSLSDKNVARLRDEITHSTGIK 66

Query: 84 NLVS 87
           LVS
Sbjct: 67 KLVS 70


>AT5G51670.1 | Symbols:  | Protein of unknown function (DUF668) |
          chr5:20993560-20995096 FORWARD LENGTH=474
          Length = 474

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 10/88 (11%)

Query: 1  MVAEAWIVKMGNQVSSNLKHALLLENLTKR--KQSHKKSDTKETIGILSFEVANVMSKTV 58
          M  E +++K+ N +SS        +  ++R  + S   S T  ++G+LSFEVA VM+K +
Sbjct: 1  MALETFLIKLKNAISS--------KPTSRRPHRSSPPISTTTSSVGVLSFEVARVMTKLL 52

Query: 59 HLHKSLSESEISKLRNEILNSEGVNNLV 86
          HL  SL++S +   R+  L+ EG+  +V
Sbjct: 53 HLTHSLTDSNLLTPRDHSLSLEGLTKIV 80


>AT5G08660.1 | Symbols:  | Protein of unknown function (DUF668) |
           chr5:2814526-2817845 FORWARD LENGTH=649
          Length = 649

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 43  IGILSFEVANVMSKTVHLHKSLSESEISKLRNEILNSEGVNNLVS 87
           +GIL+FEVAN + K+ +L +SLS+  I  L+  IL SEGV NLVS
Sbjct: 149 LGILAFEVANTIVKSSNLIESLSKRNIEHLKGTILYSEGVQNLVS 193