Miyakogusa Predicted Gene

Lj0g3v0123729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123729.1 Non Chatacterized Hit- tr|C0P5F8|C0P5F8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,46.02,5e-19,Translational machinery components,NULL; STRUCTURAL
CONSTITUENT OF RIBOSOME,NULL; 39S RIBOSOMAL PROT,CUFF.7429.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   296   7e-81
AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   295   2e-80
AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   111   2e-25
AT3G22450.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    91   6e-19
AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    55   2e-08

>AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2838789-2840955 FORWARD LENGTH=234
          Length = 234

 Score =  296 bits (757), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 143/189 (75%), Positives = 164/189 (86%), Gaps = 2/189 (1%)

Query: 1   MLKQAIGR--ICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSR 58
           MLKQ + +  I + ++Y      + P+    SC FH+G+   APRSFFGVED++DDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 59  PYTYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTN 118
           PYTYQK KKSKNP+KHVSFKQRTVAYMEPFTLDVFISKRFVSAS+THRVT +QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 119 SKDIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDN 178
           SKD+KAVLRSR DIPAC++IGRILSERA+EADVYTASYTPRD+DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 179 GIDIKVYLD 187
           GID+K+YLD
Sbjct: 226 GIDVKIYLD 234


>AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2839855-2840955 FORWARD LENGTH=189
          Length = 189

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/189 (75%), Positives = 164/189 (86%), Gaps = 2/189 (1%)

Query: 1   MLKQAIGR--ICRTSVYTCEVNGVLPWNYVPSCCFHSGQAHMAPRSFFGVEDFLDDDNSR 58
           MLKQ + +  I + ++Y      + P+    SC FH+G+   APRSFFGVED++DDD SR
Sbjct: 1   MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 60

Query: 59  PYTYQKGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTN 118
           PYTYQK KKSKNP+KHVSFKQRTVAYMEPFTLDVFISKRFVSAS+THRVT +QVAVAGTN
Sbjct: 61  PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 120

Query: 119 SKDIKAVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDN 178
           SKD+KAVLRSR DIPAC++IGRILSERA+EADVYTASYTPRD+DKFEGKIRAVVQSLIDN
Sbjct: 121 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 180

Query: 179 GIDIKVYLD 187
           GID+K+YLD
Sbjct: 181 GIDVKIYLD 189


>AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7055639-7056679 REVERSE LENGTH=187
          Length = 187

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 64  KGKKSKNPNKHVSFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIK 123
           +G+ +K PN+  S+KQRT  YM PF L+VF S++F+ A V HR TSK ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 126

Query: 124 AVLRSRSDIPACIAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGI 180
             + S  D  AC  IG++++ER+ EADVY  SY PR  ++ EGK+  V+ ++ ++GI
Sbjct: 127 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT3G22450.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7962443-7963378 FORWARD LENGTH=311
          Length = 311

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 75/107 (70%)

Query: 76  SFKQRTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPAC 135
           +F Q T  +  PF LD++ISK  V A V HRVTSK V VA + SKD+K  L SR ++ AC
Sbjct: 186 TFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAAC 245

Query: 136 IAIGRILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
            A+G +L++R+ E D++   YTPR  DK EGK++ V+Q+LIDNG+++
Sbjct: 246 AAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292


>AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr5:9860584-9860928 FORWARD LENGTH=114
          Length = 114

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 52/103 (50%)

Query: 80  RTVAYMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIG 139
           R   Y++P+ L +  + +FV A V H  T+     A +  K ++  +    D+ A   IG
Sbjct: 11  RLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIG 70

Query: 140 RILSERAREADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDI 182
           +IL ER    D+   +   +   ++ GK++AV+ S+ + G+ +
Sbjct: 71  KILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKL 113