Miyakogusa Predicted Gene

Lj0g3v0123289.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123289.2 tr|B9N708|B9N708_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_583662 PE=4
SV=1,36.05,2e-18,Ank_2,Ankyrin repeat-containing domain; ankyrin
repeats,Ankyrin repeat; seg,NULL; ANK_REP_REGION,Ank,CUFF.7390.2
         (281 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35830.1 | Symbols:  | Ankyrin repeat family protein | chr5:1...    89   4e-18
AT3G54070.1 | Symbols:  | Ankyrin repeat family protein | chr3:2...    68   9e-12

>AT5G35830.1 | Symbols:  | Ankyrin repeat family protein |
           chr5:14000313-14001416 REVERSE LENGTH=282
          Length = 282

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 91  ELCSHALQNLWQLARSIFEEFPDLVRIPLTDSGDTALHVAVSAKSTLFVKKLVELAHMTP 150
           +L   AL+  W+ A  I  E   ++   +T   +T LH+AV+AK   FV+ L  L  +  
Sbjct: 90  QLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNL--LGSLES 147

Query: 151 EDMEILNAEGNTAFCMAAIAGNSELLQIMIKKNEKLPVVSGHDGMLPVHMATLGCYHETV 210
            D+ + N +GNTA C AA +G  E+ +++I+KN+ LP++ G     P+HMA L  + E V
Sbjct: 148 NDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMV 207

Query: 211 QDLTSDRLLHYMDFKDIKRLFFMAISSYMY----------DVATKLVEKYPKPL 254
           + L  +      + ++   LF   IS+ +Y          DV  +  EK   PL
Sbjct: 208 KYLYKNTRFREFNDEEFVNLFHAVISADIYVRSIHRCSSGDVRERGKEKSTSPL 261


>AT3G54070.1 | Symbols:  | Ankyrin repeat family protein |
           chr3:20021330-20023603 REVERSE LENGTH=574
          Length = 574

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 119 LTDSGDTALHVAVSAKSTLFVKKLVELAHMTPEDMEILNAEGNTAFCMAAIAGNSELLQI 178
           +T + + ALH+AV+AK   FV+ L  L  M P D+ + N +GNT    AA  G+ E  ++
Sbjct: 81  ITGNSEIALHIAVAAKHKDFVRNL--LREMDPPDLSLKNKDGNTPLSFAAALGDIETAEM 138

Query: 179 MIKKNEKLPVVSGHDGMLPVHMATLGCYHETVQDLTSDRLLHYMDFKDIKRLFFMAISSY 238
           +I     LP +S    M P+H+A L  + E VQ L S   +  ++ +    LF   IS+ 
Sbjct: 139 LINMIRDLPDISNEKTMTPIHIAALYGHGEMVQYLFSKTSIKDLNDQQYLNLFHTMISAD 198

Query: 239 MYDV 242
           +Y V
Sbjct: 199 IYGV 202