Miyakogusa Predicted Gene

Lj0g3v0123219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0123219.1 Non Chatacterized Hit- tr|A5BE80|A5BE80_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.17,3e-18,seg,NULL; LEA_6,Late embryogenesis abundant protein,
LEA-18,CUFF.7382.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33690.1 | Symbols:  | Late embryogenesis abundant protein, g...    64   2e-11
AT2G23110.2 | Symbols:  | Late embryogenesis abundant protein, g...    63   5e-11
AT2G23110.1 | Symbols:  | Late embryogenesis abundant protein, g...    63   5e-11
AT2G23120.1 | Symbols:  | Late embryogenesis abundant protein, g...    54   1e-08

>AT2G33690.1 | Symbols:  | Late embryogenesis abundant protein,
          group 6 | chr2:14252199-14252414 FORWARD LENGTH=71
          Length = 71

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 21 LPFEDSPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATEAPT 63
          LP E SPY +Y+D+EDYK+  YGT GHQ+ KPG G G T+APT
Sbjct: 10 LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPT 52


>AT2G23110.2 | Symbols:  | Late embryogenesis abundant protein,
          group 6 | chr2:9840552-9840830 FORWARD LENGTH=92
          Length = 92

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 26 SPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATEAPTLXXXXXXXXXXXXXXXXPTGTG 85
          +PY+ Y +LEDYK +GYG +GHQEPK G G GAT+APT                  + T 
Sbjct: 27 TPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPT--PSGGLGRGGGAASTDLSSTD 84

Query: 86 ATNRQGVP 93
          A NRQGVP
Sbjct: 85 AINRQGVP 92


>AT2G23110.1 | Symbols:  | Late embryogenesis abundant protein,
          group 6 | chr2:9840552-9840830 FORWARD LENGTH=92
          Length = 92

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 26 SPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATEAPTLXXXXXXXXXXXXXXXXPTGTG 85
          +PY+ Y +LEDYK +GYG +GHQEPK G G GAT+APT                  + T 
Sbjct: 27 TPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPT--PSGGLGRGGGAASTDLSSTD 84

Query: 86 ATNRQGVP 93
          A NRQGVP
Sbjct: 85 AINRQGVP 92


>AT2G23120.1 | Symbols:  | Late embryogenesis abundant protein,
          group 6 | chr2:9842102-9842353 FORWARD LENGTH=83
          Length = 83

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 29/39 (74%)

Query: 25 DSPYVQYKDLEDYKRQGYGTEGHQEPKPGRGAGATEAPT 63
          DSPY+    LEDYK + YG EGHQEP PG G G+T+APT
Sbjct: 29 DSPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPT 67