Miyakogusa Predicted Gene

Lj0g3v0122329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0122329.1 Non Chatacterized Hit- tr|H0XGW1|H0XGW1_OTOGA
Uncharacterized protein OS=Otolemur garnettii
GN=POLR2,37.41,2e-19,HRDC-like,HRDC-like; DNA-directed RNA-polymerase
II subunit,RNA polymerase II, Rpb4, core;
DNA-DIREC,NODE_25702_length_500_cov_362.506012.path1.1
         (138 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09920.1 | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RN...   265   7e-72
AT4G15950.1 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, R...    80   3e-16

>AT5G09920.1 | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA
           polymerase II, Rpb4, core protein | chr5:3096276-3097370
           FORWARD LENGTH=138
          Length = 138

 Score =  265 bits (677), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/138 (91%), Positives = 135/138 (97%)

Query: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ S+DPMNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
           YVKRFSRYKNPDAVRQVREIL+R+QL EFELCVLGNLCPETVEEA+AMVPS+KT+GRA D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLNDLSLIKKFE 138
           DEAIEKMLNDLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138


>AT4G15950.1 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II,
           Rpb4, core protein | chr4:9040743-9041994 FORWARD
           LENGTH=205
          Length = 205

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 21  AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
           A+C+M+CE   IL+    QL   S+DP  ++   ++++L YV+    Y NP +VR+V E 
Sbjct: 89  AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148

Query: 81  LARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKFE 138
           L  Y +++ E+CV+ N   E+V+E +A +PS+KT+ +   ++ ++  L +LS +KK E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKKSE 205