Miyakogusa Predicted Gene

Lj0g3v0121289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0121289.1 Non Chatacterized Hit- tr|E0VG30|E0VG30_PEDHC
Putative uncharacterized protein OS=Pediculus humanus
,38.71,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; 5-METHYLCYTOSINE G/T
MISMATCH-SPECIFIC DNA GLYCOSYLASE,NULL; coi,CUFF.7232.1
         (675 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein | ...   217   2e-56
AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein | ...    89   1e-17
AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein | ...    83   6e-16

>AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528416 FORWARD LENGTH=445
          Length = 445

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 122/169 (72%), Gaps = 4/169 (2%)

Query: 507 TKKVRKPPIR---FSASEKRNEAYKKRTADNTWVPPRSHIHLIQEDHAFDPWRVLAICML 563
           ++ VRK PI     S S+K ++ Y ++T DNTWVPPRS  +L+QEDH  DPWRVL ICML
Sbjct: 275 SRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICML 334

Query: 564 LNLTTGRQVKEVISNFFKLCPDAETCTQVSEDEILEVIRSLGLH-KRAAMLQRFSREYLA 622
           LN T+G Q + VIS+ F LC DA+T T+V E+EI  +I+ LGL  KR  M+QR S EYL 
Sbjct: 335 LNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLEYLQ 394

Query: 623 ENWTHVTQLHGVGKYGADAYAIFCTGKWDRVTPNDHKLVGYCKFLHLFY 671
           E+WTHVTQLHGVGKY ADAYAIFC G WDRV PNDH L  Y  +L + Y
Sbjct: 395 ESWTHVTQLHGVGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYLRIRY 443


>AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=358
          Length = 358

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 3/69 (4%)

Query: 507 TKKVRKPPIR---FSASEKRNEAYKKRTADNTWVPPRSHIHLIQEDHAFDPWRVLAICML 563
           ++ VRK PI     S S+K ++ Y ++T DNTWVPPRS  +L+QEDH  DPWRVL ICML
Sbjct: 275 SRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICML 334

Query: 564 LNLTTGRQV 572
           LN T+G QV
Sbjct: 335 LNKTSGAQV 343


>AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=352
          Length = 352

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 3/65 (4%)

Query: 507 TKKVRKPPIR---FSASEKRNEAYKKRTADNTWVPPRSHIHLIQEDHAFDPWRVLAICML 563
           ++ VRK PI     S S+K ++ Y ++T DNTWVPPRS  +L+QEDH  DPWRVL ICML
Sbjct: 275 SRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICML 334

Query: 564 LNLTT 568
           LN T+
Sbjct: 335 LNKTS 339