Miyakogusa Predicted Gene

Lj0g3v0120679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120679.1 Non Chatacterized Hit- tr|K4BND7|K4BND7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,83.33,0.000000000000002,Translin,Translin; seg,NULL; TRANSLIN
ASSOCIATED FACTOR X,NULL; TRANSLIN AND TRANSLIN ASSOCIATED
PRO,CUFF.7179.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03780.1 | Symbols:  | Translin family protein | chr2:1152716...   154   3e-38

>AT2G03780.1 | Symbols:  | Translin family protein |
           chr2:1152716-1154285 REVERSE LENGTH=287
          Length = 287

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 93/140 (66%), Gaps = 7/140 (5%)

Query: 7   SSLHIHRVSLFMAASK--PQRLFQRTDVQSSPKXXXXXXXXXXXXXXXXXXXDSFAKYAQ 64
           SS    RV+  + A K  PQRL Q  +                         D+F+ YA 
Sbjct: 5   SSSAFQRVAFMLMAPKLKPQRLHQIAE-----SGVEHLVKKARTMSTESSMKDAFSTYAD 59

Query: 65  YLNDLNEKRERVVKASRDVTMNSKKVIFQVHRMSKYNKLEVLEKAEKDLAAVRDQHISRL 124
           YLN+ NEKRERVVK SRD+TMNSKKVIFQVHR+SK NK EVLEKA KDL AVRDQH +RL
Sbjct: 60  YLNNFNEKRERVVKVSRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARL 119

Query: 125 VRELQGTDFWKLRRAYSPGV 144
           ++ELQGTDFWKLRRAYSPGV
Sbjct: 120 MKELQGTDFWKLRRAYSPGV 139