Miyakogusa Predicted Gene

Lj0g3v0120319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120319.1 tr|D7LTK1|D7LTK1_ARALL Clathrin adaptor complex
small chain family protein OS=Arabidopsis lyrata
sub,73.68,7e-19,ADAPTOR-RELATED PROTEIN COMPLEX 3,NULL; CLATHRIN COAT
ASSEMBLY PROTEIN,Adaptor protein complex, sigm,CUFF.7142.1
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50860.1 | Symbols:  | Clathrin adaptor complex small chain f...   100   2e-22

>AT3G50860.1 | Symbols:  | Clathrin adaptor complex small chain
          family protein | chr3:18902346-18903959 FORWARD
          LENGTH=166
          Length = 166

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 54/58 (93%)

Query: 1  MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGP 58
          MI+AV+++NTQGKPRL+KFY+Y PVEKQQ+LIR VF+VLCSRPE+VSNF++ ES FGP
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGP 58