Miyakogusa Predicted Gene
- Lj0g3v0120299.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0120299.1 tr|B9GMB6|B9GMB6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_750797 PE=4
SV=1,56,7e-16,SUBFAMILY NOT NAMED,NULL; ANDROGEN INDUCED INHIBITOR OF
PROLIFERATION (AS3) / PDS5-RELATED,NULL,CUFF.7141.1
(180 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 219 6e-58
AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 214 2e-56
AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 214 2e-56
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPR... 207 3e-54
AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 ... 207 4e-54
AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWA... 139 1e-33
AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWA... 139 1e-33
AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWA... 139 1e-33
AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1:... 94 5e-20
AT1G77600.2 | Symbols: | ARM repeat superfamily protein | chr1:... 94 5e-20
AT1G77600.1 | Symbols: | ARM repeat superfamily protein | chr1:... 94 5e-20
>AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:5473672-5478050 FORWARD LENGTH=990
Length = 990
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 139/180 (77%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
M+AL+SA+LLR+PD DV +SV SCL EI RITAP++PY+DEQMK++F++ + AFEKL
Sbjct: 63 MRALVSADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADA 122
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
S R Y KA ILE V KVRSSLVMLDLECDDLV+EMF F ++R HP V+ SME+IM
Sbjct: 123 SSRSYRKAEVILETVAKVRSSLVMLDLECDDLVLEMFQRFLKIIRPDHPQLVLVSMETIM 182
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
VI+ES+E+ DLL+ LL + +K++Q +SP + TL EKV++SC KL P +M+A++SSG
Sbjct: 183 ITVIDESEEVPMDLLEILLTTVKKDSQDVSPAALTLVEKVLSSCTCKLQPCIMEALKSSG 242
>AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=774
Length = 774
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 136/178 (76%)
Query: 3 ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
AL+S +LL HPD DV +SV SCL EI RITAP++PY D+ MKE+F+L + AFEKL S
Sbjct: 11 ALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIEAFEKLADASS 70
Query: 63 RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
R Y+KA +L+NV KV+S LVMLDLEC DL+++MF +FF +RS HP V SME IM
Sbjct: 71 RSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLVFSSMELIMIA 130
Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
+I+E++++S DLL LL + +KENQ +SP+SW+LAEKV++ CA KL P++++A++S G
Sbjct: 131 IIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYIIEALKSRG 188
>AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=773
Length = 773
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 136/178 (76%)
Query: 3 ALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVSG 62
AL+S +LL HPD DV +SV SCL EI RITAP++PY D+ MKE+F+L + AFEKL S
Sbjct: 11 ALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIEAFEKLADASS 70
Query: 63 RGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIMTL 122
R Y+KA +L+NV KV+S LVMLDLEC DL+++MF +FF +RS HP V SME IM
Sbjct: 71 RSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLVFSSMELIMIA 130
Query: 123 VINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
+I+E++++S DLL LL + +KENQ +SP+SW+LAEKV++ CA KL P++++A++S G
Sbjct: 131 IIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYIIEALKSRG 188
>AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: Tudor/PWWP/MBT superfamily protein
(TAIR:AT1G15940.1); Has 137162 Blast hits to 70781
proteins in 2973 species: Archae - 289; Bacteria -
24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink). | chr4:15419435-15423939 REVERSE LENGTH=873
Length = 873
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
MK L+ +L +H D DV ++V +C++EITRITAPD+PYDD+QMKEVFKL VS+FE L
Sbjct: 59 MKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDK 118
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
S R Y K ++ILE V KVRS +VMLDLECD L+IEMF HF +R H NV SME+IM
Sbjct: 119 SSRSYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIM 178
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
TLV+ ES++I ++L P+L S +K+++ IS +S LAE+V+++CA KL +L +AV+SSG
Sbjct: 179 TLVLEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSG 237
>AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is:
Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). |
chr4:15419435-15423939 REVERSE LENGTH=872
Length = 872
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
MK L+ +L +H D DV ++V +C++EITRITAPD+PYDD+QMKEVFKL VS+FE L
Sbjct: 59 MKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDK 118
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
S R Y K ++ILE V KVRS +VMLDLECD L+IEMF HF +R H NV SME+IM
Sbjct: 119 SSRSYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIM 178
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKLTPFLMKAVESSG 180
TLV+ ES++I ++L P+L S +K+++ IS +S LAE+V+++CA KL +L +AV+SSG
Sbjct: 179 TLVLEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSG 237
>AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1607
Length = 1607
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 107/168 (63%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
+ A+I E+L H D+DV + V SC++EITRITAP++PY D MK++F+L VSAF L V
Sbjct: 56 LDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDV 115
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
SG + + + ILE V K RS +VMLDLECDDLV E+F F V R HP V SM++IM
Sbjct: 116 SGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIM 175
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
+++ ES+++ LL LL + + + LA KVI CA K+
Sbjct: 176 IVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKV 223
>AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1605
Length = 1605
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 107/168 (63%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
+ A+I E+L H D+DV + V SC++EITRITAP++PY D MK++F+L VSAF L V
Sbjct: 56 LDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDV 115
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
SG + + + ILE V K RS +VMLDLECDDLV E+F F V R HP V SM++IM
Sbjct: 116 SGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIM 175
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
+++ ES+++ LL LL + + + LA KVI CA K+
Sbjct: 176 IVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKV 223
>AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1606
Length = 1606
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 107/168 (63%)
Query: 1 MKALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHV 60
+ A+I E+L H D+DV + V SC++EITRITAP++PY D MK++F+L VSAF L V
Sbjct: 56 LDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDV 115
Query: 61 SGRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIHSMESIM 120
SG + + + ILE V K RS +VMLDLECDDLV E+F F V R HP V SM++IM
Sbjct: 116 SGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIM 175
Query: 121 TLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEKVITSCAVKL 168
+++ ES+++ LL LL + + + LA KVI CA K+
Sbjct: 176 IVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKV 223
>AT1G77600.3 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1424
Length = 1424
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 24/193 (12%)
Query: 2 KALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVS 61
K++I LL++ D DV++ VT C++E+ RI AP P++DE ++++F L ++ F +L
Sbjct: 65 KSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEFSELSDTV 124
Query: 62 GRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIH--SMES- 118
+ K ILE V +++ L+MLD +C DLV EMF+ FF +VR H ++I+ SM++
Sbjct: 125 SPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLINQKSMKTQ 184
Query: 119 -------------------IMTLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEK 159
IM+ V+ E E + + +L++ KE + + + LA
Sbjct: 185 QRKANTQQTQHSLFNNILAIMSDVLEE--EANSSFVVVILENLVKEGEDTTSGADKLASS 242
Query: 160 VITSCAVKLTPFL 172
+I CA +L P +
Sbjct: 243 LIERCADRLEPLI 255
>AT1G77600.2 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1410
Length = 1410
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 24/193 (12%)
Query: 2 KALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVS 61
K++I LL++ D DV++ VT C++E+ RI AP P++DE ++++F L ++ F +L
Sbjct: 65 KSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEFSELSDTV 124
Query: 62 GRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIH--SMES- 118
+ K ILE V +++ L+MLD +C DLV EMF+ FF +VR H ++I+ SM++
Sbjct: 125 SPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLINQKSMKTQ 184
Query: 119 -------------------IMTLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEK 159
IM+ V+ E E + + +L++ KE + + + LA
Sbjct: 185 QRKANTQQTQHSLFNNILAIMSDVLEE--EANSSFVVVILENLVKEGEDTTSGADKLASS 242
Query: 160 VITSCAVKLTPFL 172
+I CA +L P +
Sbjct: 243 LIERCADRLEPLI 255
>AT1G77600.1 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1367
Length = 1367
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 24/193 (12%)
Query: 2 KALISAELLRHPDEDVNISVTSCLAEITRITAPDSPYDDEQMKEVFKLKVSAFEKLCHVS 61
K++I LL++ D DV++ VT C++E+ RI AP P++DE ++++F L ++ F +L
Sbjct: 65 KSIIKHALLKNRDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEFSELSDTV 124
Query: 62 GRGYEKALAILENVWKVRSSLVMLDLECDDLVIEMFHHFFGVVRSSHPSNVIH--SMES- 118
+ K ILE V +++ L+MLD +C DLV EMF+ FF +VR H ++I+ SM++
Sbjct: 125 SPYFSKRAKILETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVREHHQQSLINQKSMKTQ 184
Query: 119 -------------------IMTLVINESDEISPDLLKPLLDSARKENQTISPISWTLAEK 159
IM+ V+ E E + + +L++ KE + + + LA
Sbjct: 185 QRKANTQQTQHSLFNNILAIMSDVLEE--EANSSFVVVILENLVKEGEDTTSGADKLASS 242
Query: 160 VITSCAVKLTPFL 172
+I CA +L P +
Sbjct: 243 LIERCADRLEPLI 255