Miyakogusa Predicted Gene

Lj0g3v0120039.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0120039.2 Non Chatacterized Hit- tr|K4AY91|K4AY91_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,29.6,9e-18,
,CUFF.7146.2
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    79   2e-15

>AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:4014455-4017675 FORWARD LENGTH=638
          Length = 638

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 115/259 (44%), Gaps = 35/259 (13%)

Query: 1   MASVLKAVAEAAEDVMKSKSSGSVFNRLGSGRNS-SVD----------KSQLEDNF-QHQ 48
           MA+V+KAVAEAAED  K KS  SVF+R+     S ++D          K +   NF Q Q
Sbjct: 239 MATVMKAVAEAAEDAKKPKSGRSVFDRISHSTGSETLDQNMVLGEVSPKDEESRNFSQGQ 298

Query: 49  EQNQSLYLQRSGYNGQRPANTTIMEHETGAHSDSASDNEGF-------HDVDVMGHRVTE 101
           E  Q  Y Q    NG    N T   ++TG + D +SD           H    +G+R+  
Sbjct: 299 EAVQLQYTQSLANNGVYFENMTT--NDTGLNPDFSSDRGRLGSSVNVSHPSTYLGNRINN 356

Query: 102 ISQFSSSGGNADDSLRLKRNREQEKPVAARASHKIVNISVNVSTWKPPLYQEPSHFAQLA 161
            +         DDS R+K    Q +       HK  + S N+ T K    +E      + 
Sbjct: 357 PNSLQHR--LVDDSKRVKGTNYQNRLPEVATKHKTASFSGNIDTGKTVKLEEQRKIPDVG 414

Query: 162 GHKGSDH------ETGAHRSGMQLMEDNTNTSKVSNGNANPSPDVQKESSKSQLCISGSS 215
             +  D       E     S  +++ D      + NGN  P+  V++ES+ ++  + G+ 
Sbjct: 415 LQRYMDEGRLVSSEATTQLSTQKILGDT-----IGNGNVKPAASVKEESTTNK-SVPGTL 468

Query: 216 LAGRPLEDVESRTIFVSNV 234
              RPLED  SRTIFV+NV
Sbjct: 469 STTRPLEDASSRTIFVANV 487