Miyakogusa Predicted Gene

Lj0g3v0118999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0118999.1 Non Chatacterized Hit- tr|J3MFM4|J3MFM4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,31.5,4e-19,seg,NULL; coiled-coil,NULL; UBN2_3,NULL;
OS03G0835200 PROTEIN,NULL; GAG-POL-RELATED
RETROTRANSPOSON,,CUFF.7039.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    60   8e-10
AT5G48050.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    54   9e-08

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 25  DRGNYKLWRSLVLPLLRGQKLDGYIFGTKKCPDEFITIEGSKKTNPDFEDWISTDQLLLG 84
           D  NY  W+      LR  K  G+I GT   PD F         +P ++ W   + +++ 
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF---------SPLYQPWEQCNAMVMY 88

Query: 85  WLINSMTQDVATQLLHCETSKQLWEAAQTLASAHTRSKITLLKTEFHRTGKGGLKMEEYL 144
           WL+NSMT  +   +++ ET+ ++WE  + +       KI  L+       +GG  +EEY 
Sbjct: 89  WLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYF 148

Query: 145 DKMKGI 150
            K+  +
Sbjct: 149 GKLSKV 154


>AT5G48050.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:19472661-19473770
           REVERSE LENGTH=369
          Length = 369

 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 19  FCSVKLDRGNYKLWRSLVLPLLRGQKLDGYIFGTKKCPDEFITIEGSKKTNPDFED-WIS 77
           F ++ L++ NY +WR L   L     + G+I             +GS    P  E  W  
Sbjct: 23  FVTLDLNKLNYDVWRELFETLCLSFGVLGHI-------------DGSSTPTPMTEKRWKE 69

Query: 78  TDQLLLGWLINSMTQDVATQLLHCE-TSKQLWEAAQTLASAHTRSKITLLKTEFHRTGKG 136
            D L+  W+  ++T  +   ++    T++ LW + + L   +  ++    + E   T   
Sbjct: 70  RDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTID 129

Query: 137 GLKMEEYLDKMKGIEDNLDLDGSPVSTLDLITQILSGLDNDYNPIVVQLSDKEDLTS-VE 195
            L + EY  K+K + D L    SP+S   L+  +L+GL   Y+ I+  +  K    S  E
Sbjct: 130 DLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTE 189

Query: 196 LQAQLLTYENR 206
            ++ LL  E+R
Sbjct: 190 ARSMLLMEESR 200