Miyakogusa Predicted Gene

Lj0g3v0118389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0118389.1 CUFF.6981.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silenc...   289   9e-79
AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin c ...   115   3e-26

>AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silencing
           3 | chr3:18258613-18260803 REVERSE LENGTH=420
          Length = 420

 Score =  289 bits (740), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 179/226 (79%)

Query: 1   MRAIVCRTYEGVKALEMYDKEGCINKSSGLHGLGPSIGRPLDGRFLVICLESLRPYTGKY 60
           M A+VCR YE V ALE YD  G I+ ++GLH LG SIGR +   F  ICLE+LRPY G++
Sbjct: 181 MLAVVCRNYESVTALEAYDNHGNIDINAGLHCLGSSIGREIGDSFDAICLENLRPYVGQH 240

Query: 61  FLDDSERKLDILKPRLPNGECPPGFLGFAVNMINIDSWNLFCVTPSGYGLRETLFYNLFS 120
             DD +R+LD+LKP+LPNGECPPGFLGFAVNMI ID   L CVT  GYGLRETLFYNLFS
Sbjct: 241 IADDLQRRLDLLKPKLPNGECPPGFLGFAVNMIQIDPAYLLCVTSYGYGLRETLFYNLFS 300

Query: 121 RLQVYKTRAEMIQALPCISDGALSLDGGMVRSCGVFSLGNREDVDVKFPKPDRSTELDGE 180
           RLQVYKTRA+MI ALPCISDGA+SLDGG++R  G+F+LGNR++V+V+F KP  S  +D  
Sbjct: 301 RLQVYKTRADMISALPCISDGAVSLDGGIIRKTGIFNLGNRDEVNVRFAKPTASRTMDNY 360

Query: 181 IETERQMKDIKWKKEKVLEDLKRERTLLDMAKFNFGKKKNDFLKFL 226
            E E++MK++KWKKEK LED+KRE+ L + A FNFGKKK +F++ L
Sbjct: 361 SEAEKKMKELKWKKEKTLEDIKREQVLREHAVFNFGKKKEEFVRCL 406


>AT5G24280.1 | Symbols: GMI1 | gamma-irradiation and mitomycin c
            induced 1 | chr5:8251378-8261401 REVERSE LENGTH=1598
          Length = 1598

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 5/172 (2%)

Query: 34   GPSIGRPLDGRFLVICLESLRPYTGKYFLDDSERKLDILKPRLPNGECPPGFLGFAVNMI 93
              S+GR +  RFLVICL++ RP+      +D +++L +  P LPNG+  PGF G+AVNMI
Sbjct: 1405 AASLGRSITNRFLVICLDATRPWRNGLVRNDPQKRLAMDNPYLPNGDPIPGFKGYAVNMI 1464

Query: 94   NIDSWNLFCVTPSGYGLRETLFYNLFSRLQVYKTRAEMIQALPCISDG-ALSLDGGMVRS 152
            ++ S  L   + SGYGLRETLFY +F  LQVY+T   +  ALP I+ G A+SLDG + R 
Sbjct: 1465 DLASEELDIQSSSGYGLRETLFYGVFRELQVYETAEHLEAALPHINGGDAVSLDGVIARE 1524

Query: 153  CG-VFSLGNREDVDVKFPKPDRSTELDGEIETERQMKDIKWKKEKVLEDLKR 203
             G ++S     +V       +R  +   ++E  R   D K K E+++ +  R
Sbjct: 1525 NGFIYSGCCTPEVHFPITVTERQEKALVQLEITR---DKKRKTEEMMTEENR 1573