Miyakogusa Predicted Gene

Lj0g3v0117459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0117459.1 tr|B9P6P4|B9P6P4_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_792942
PE=4,35.03,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.6920.1
         (438 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48770.1 | Symbols:  | DNA binding;ATP binding | chr3:1807926...   323   1e-88

>AT3G48770.1 | Symbols:  | DNA binding;ATP binding |
            chr3:18079261-18086817 REVERSE LENGTH=1899
          Length = 1899

 Score =  323 bits (829), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 255/451 (56%), Gaps = 19/451 (4%)

Query: 1    MATEYKFPSDFSLIIRQQKWLQTRLGDYRDPRQCILYGPEWKSISSITLLPFINDSDNCY 60
            M + YK+P +     +Q +WL T+LGD+R P+ CIL+  EW+ +  I  LPFI+D  N Y
Sbjct: 1306 MGSLYKYPEELMKSFKQFQWLHTKLGDFRAPKDCILFDSEWEPLRLIANLPFIDDGPNWY 1365

Query: 61   GMGIHEYKEELKSFGVVTEWKGGLQFVPKYLKFPSDPSTITPESVFSLLECIRLLMQEKK 120
            G  IHE+++EL+S GV  E + G+  V   L  P DPS I P S  SL  CI+ L +++ 
Sbjct: 1366 GKSIHEFRKELESLGVTVELRKGMSHVISSLSLP-DPSRIAPSSALSLFRCIKFLREDRF 1424

Query: 121  LVIEDDLTKRLSRNWLKTHAGYHPPDKCLLFNSKWDLYLKPSDGPFIDENFYGPKIASYS 180
              +  +L  ++S  WLKTHAGY  P++CLLF+  W   L+P DGPFIDE +YG  I S+ 
Sbjct: 1425 QQLPKELLDKVSVKWLKTHAGYRSPEECLLFDRTWK--LEPCDGPFIDEEYYGSDINSFR 1482

Query: 181  KELNEIGVIVEVEKGCNLVASHLDFLSDYETIVKIYLYLNQ-HWKPEDKAAKN-VWIPDG 238
            +EL  IGV  + +K C L+A ++  LS+ + I ++Y +L++  WKPE  A+   +WIP  
Sbjct: 1483 EELIAIGVGHDSDKACQLLARNVYKLSETDAISRVYRFLSEAEWKPEKGASSGRIWIPS- 1541

Query: 239  IKGGKWVNSEECIIHDPDNLFGSKFHVLEGIY----DKKILPFFSFAIEVRNKPSLDDYV 294
                KW +   C++ D D LFGSKF+VLE  Y    D  +L FFS A  VR  PS++DY 
Sbjct: 1542 --DEKWADISSCVLFDKDKLFGSKFNVLENHYCSGKDHNLLGFFSSAFGVRINPSIEDYC 1599

Query: 295  ALWNDWESSVEQLPFDKCTMFWMFILKHXXXXXXXXXXXXXXXXXXXXG-----NNEIFL 349
             LW  WE +  +L   +C  FW F+++H                          N+ + L
Sbjct: 1600 ELWKYWEKTKNRLSSHECCAFWSFVVRHGDTVKAEKLLSESFSRLPVHSPDCNNNDGVML 1659

Query: 350  LDKEDVFIPDNLHLKKIFEDETVFAWYPQQNPAPSSRSKLFDIYRKIGVRNISESLQKEE 409
                DVFI D+L LK +F D  VF WYP  +    SR++L +IYR IGV+ +S+ ++  E
Sbjct: 1660 SSISDVFIADDLLLKDMFIDSPVFVWYPTPSIPTLSRTRLIEIYRNIGVKEVSKCVEIAE 1719

Query: 410  SSFLN-EVELQQ-VDPNTIFNVKGLVTLILG 438
            +     + ELQ+ VDP       GLV LIL 
Sbjct: 1720 ADLTGFKTELQEVVDPKKNLIGPGLVKLILA 1750



 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 113/211 (53%), Gaps = 11/211 (5%)

Query: 2    ATEYKFPSDFSLIIRQQKWLQTRL---GDYRDPRQCILYGPEWKSI----SSITLLPFIN 54
               +   S+F   +R   WL+T +    DYR P Q   +   W SI    S +  +P ++
Sbjct: 967  CNRHSLRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILVDIPLVD 1026

Query: 55   DSDNCYGMGIHEYKEELKSFGVVTEWKGGLQFVPKYLKFPSDPSTITPESVFSLLECIRL 114
             S   YG  I +YKEELK  GV+ E+    +FV  +L   ++ ST +  +VFS+L+ IR 
Sbjct: 1027 RS--YYGNEIEKYKEELKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILKFIRY 1084

Query: 115  LMQEKKLVIEDDLTKRLSRNWLKTHAGYHPPDKCLLFNSKWDLYLKPSDGPFIDENFYG- 173
            L +EK+L   D +T   +  WLKT +GY  PD  +LF+ +W      SD PFID  FYG 
Sbjct: 1085 L-REKRLSPADFITAVKNGPWLKTISGYRSPDGAVLFSEEWKAASLISDIPFIDRGFYGV 1143

Query: 174  PKIASYSKELNEIGVIVEVEKGCNLVASHLD 204
              +  Y +EL  +GV+V+     +L+ SHL+
Sbjct: 1144 VSLNGYKEELELLGVVVKFPDNYSLIVSHLN 1174



 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 106/196 (54%), Gaps = 10/196 (5%)

Query: 8    PSDFSLIIRQQKWLQTRLGDYRDPRQCILYGPEWKSISSITLLPFINDSDNCYGM-GIHE 66
            P+DF   ++   WL+T +  YR P   +L+  EWK+ S I+ +PFI+     YG+  ++ 
Sbjct: 1092 PADFITAVKNGPWLKT-ISGYRSPDGAVLFSEEWKAASLISDIPFIDR--GFYGVVSLNG 1148

Query: 67   YKEELKSFGVVTEWKGGLQFVPKYLKFPSDPSTITPESVFSLLECIRLLMQEKKLVIEDD 126
            YKEEL+  GVV ++      +  +L   +  + +TP+++F +L+C+R L   + +    +
Sbjct: 1149 YKEELELLGVVVKFPDNYSLIVSHLN-TAKLTYLTPDAMFLVLDCMRQLSPHRLI----N 1203

Query: 127  LTKRLSRNWLKTHAGYHPPDKCLLFNSKWDLYLKPSDG-PFIDENFYGPKIASYSKELNE 185
                 S+ +     GY  P +C + + +W   L   D  P ID++FYG +I +Y  EL +
Sbjct: 1204 ALWNSSQCFKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDDDFYGSRIFAYKGELKQ 1263

Query: 186  IGVIVEVEKGCNLVAS 201
            IGV +++E+   +  S
Sbjct: 1264 IGVKLQLEEAVKMFVS 1279



 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 21   LQTRLGDYRDPRQCILYGPEWKSISSI-TLLPFINDSDNCYGMGIHEYKEELKSFGVVTE 79
             +T+   Y+ P +C +  PEW  + S+    P I+D  + YG  I  YK ELK  GV  +
Sbjct: 1212 FKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDD--DFYGSRIFAYKGELKQIGVKLQ 1269

Query: 80   WKGGLQFVPKYLKFPSDPSTITPESVFSLLECIRLLMQEKKLVIEDDLTKRLSRNWLKTH 139
             +  ++      K  +  S +T  +  SLL C + LM       E+ +       WL T 
Sbjct: 1270 LEEAVKMFVSTFKQKAISSGLTRCTASSLLSCYKKLMGSLYKYPEELMKSFKQFQWLHTK 1329

Query: 140  AG-YHPPDKCLLFNSKWDLYLKPSDGPFIDE--NFYGPKIASYSKELNEIGVIVEVEKGC 196
             G +  P  C+LF+S+W+     ++ PFID+  N+YG  I  + KEL  +GV VE+ KG 
Sbjct: 1330 LGDFRAPKDCILFDSEWEPLRLIANLPFIDDGPNWYGKSIHEFRKELESLGVTVELRKGM 1389

Query: 197  NLVASHLDF 205
            + V S L  
Sbjct: 1390 SHVISSLSL 1398



 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 63   GIHEYKEELKSFGVVTEWKGGLQFV-PKYLKFPSDPSTITPESVFSLLECIRLLMQEKKL 121
            G+   K++L  F   +   G +  + P  +  P+    +T E+V  LLE I    +    
Sbjct: 914  GLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVLLLLEWINKCNRHS-- 971

Query: 122  VIEDDLTKRLSRNWLKTH----AGYHPPDKCLLFNSKWDLYLKPS----DGPFIDENFYG 173
            +  + L      +WL+T     + Y PP +     S W   L+      D P +D ++YG
Sbjct: 972  LRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILVDIPLVDRSYYG 1031

Query: 174  PKIASYSKELNEIGVIVEVEKGCNLVASHLDFLSDYET--------IVKIYLYLNQ-HWK 224
             +I  Y +EL   GV+ E  + C  V +HL  L++  T        I+K   YL +    
Sbjct: 1032 NEIEKYKEELKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILKFIRYLREKRLS 1091

Query: 225  PEDKAAKNVWIPDGIKGGKWVNS 247
            P D           +K G W+ +
Sbjct: 1092 PAD-------FITAVKNGPWLKT 1107