Miyakogusa Predicted Gene

Lj0g3v0116939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116939.1 Non Chatacterized Hit- tr|K4ASQ1|K4ASQ1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,32.26,0.000000000000006, ,CUFF.6876.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   102   2e-22

>AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1955959-1959051 FORWARD
           LENGTH=1030
          Length = 1030

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 105/201 (52%), Gaps = 24/201 (11%)

Query: 10  MRALSKFRS--LDPYLRSQSHVFHLSSKPSSHPHRAHKLPNSNKLSDTTDASRALFNEIT 67
           M+AL +F+S   DP  R    V       SS  ++  +   ++K+     A  +LFNEIT
Sbjct: 1   MKALFRFKSCLFDPTRRRNQLVSFSGFSKSSKSNKTRETTTTSKIQAEATAITSLFNEIT 60

Query: 68  EILGADTVIPDQSPSGFLFPGETR---ECEGGLNEQPV---CAEGVCGNAAEELVVDKGE 121
           EILG D V  D++         TR      G +++  V   C EGV  NAA       GE
Sbjct: 61  EILGTDVVKLDET---------TRLRSHVSGAVSDNGVSVSCTEGVRQNAAMGF---SGE 108

Query: 122 SFAVMEDAQLGNMGEEELSRMVGEITEIVRSENGSGSMEERLENVGYGLKAEVFDKVLQR 181
                E AQ     E + S +V EIT +VR ++   SME+RLE + +  + E+ + VL+R
Sbjct: 109 D----EKAQKVLHEEVDFSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKR 164

Query: 182 CFKMPRLALRVFNWLKLKEGF 202
           CFK+P LA+R FNW+K K+GF
Sbjct: 165 CFKVPHLAMRFFNWVKQKDGF 185