Miyakogusa Predicted Gene

Lj0g3v0116669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116669.1 Non Chatacterized Hit- tr|I1QCQ9|I1QCQ9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,55.13,0.000000000000007, ,CUFF.6854.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00450.1 | Symbols: CRP, CCT | RNA polymerase II transcriptio...   112   4e-26

>AT4G00450.1 | Symbols: CRP, CCT | RNA polymerase II transcription
          mediators | chr4:202425-210666 FORWARD LENGTH=2253
          Length = 2253

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 1  MQRYHAGNCTSAVNNSTIGGPSTRDIGRTDPSSLPANFPISSRRQPPLYSYKLKCDKEPL 60
          MQRYHA NCTSAVNNS IGG S RD GR D SS+  N+ ++SRR PPL  YKLKC+K+ L
Sbjct: 1  MQRYHAANCTSAVNNSAIGGASARDSGRADSSSI-GNYSLNSRRPPPLTPYKLKCEKDGL 59

Query: 61 NSRLGPPDFHPQTPNCPE 78
          NSRLGPPDFHP T N PE
Sbjct: 60 NSRLGPPDFHPPTSNSPE 77