Miyakogusa Predicted Gene

Lj0g3v0116369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116369.1 tr|Q6YWF9|Q6YWF9_ORYSJ Nucleoporin-like protein
OS=Oryza sativa subsp. japonica GN=OSJNBb0018G11.20
,43.14,0.000000000000002,Nup160,Nucleoporin Nup120/160,CUFF.6831.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33410.1 | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AU...   107   4e-24
AT1G33410.2 | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | ...   107   5e-24

>AT1G33410.1 | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AUXIN
           RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504
          Length = 1504

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 22/165 (13%)

Query: 19  GKEVPIIGS-DAVRWIDLSVPSSANIX------------------PDARASCPAIGDPTT 59
           G EVP+ G  + V+WI++SVPS +                      +  AS   IG+P+ 
Sbjct: 11  GMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSVIGEPSI 70

Query: 60  YLIWRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLL 119
             +WRI+K  P +LELL++SA   FP  GLRF F + L PFAF+  +E  G S R  Y L
Sbjct: 71  SFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADE-GGDSGRLVYFL 129

Query: 120 YVLTVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNN 164
           Y LT SG+ Y+L++ N  AY S   S+ P+D L+ LD+R Y++ +
Sbjct: 130 YSLTPSGVVYVLKLSNTLAYKSG--SVFPLDHLIHLDVRPYLNES 172


>AT1G33410.2 | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 |
           chr1:12109769-12118828 REVERSE LENGTH=1504
          Length = 1504

 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 22/165 (13%)

Query: 19  GKEVPIIGS-DAVRWIDLSVPSSANIX------------------PDARASCPAIGDPTT 59
           G EVP+ G  + V+WI++SVPS +                      +  AS   IG+P+ 
Sbjct: 11  GMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSVIGEPSI 70

Query: 60  YLIWRIHKAHPQSLELLEVSASKEFPRLGLRFTFPEALCPFAFICKNEISGSSSRFPYLL 119
             +WRI+K  P +LELL++SA   FP  GLRF F + L PFAF+  +E  G S R  Y L
Sbjct: 71  SFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADE-GGDSGRLVYFL 129

Query: 120 YVLTVSGLAYLLRIRNVSAYASCSISIIPVDELLELDIRGYVSNN 164
           Y LT SG+ Y+L++ N  AY S   S+ P+D L+ LD+R Y++ +
Sbjct: 130 YSLTPSGVVYVLKLSNTLAYKSG--SVFPLDHLIHLDVRPYLNES 172