Miyakogusa Predicted Gene

Lj0g3v0116299.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116299.3 Non Chatacterized Hit- tr|I1JJJ1|I1JJJ1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42440 PE,86.7,0,MEIOTIC
RECOMBINATION PROTEIN SPO11,Spo11/DNA topoisomerase VI, subunit A; DNA
topoisomerase IV, alp,CUFF.6826.3
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13170.1 | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, s...   348   2e-96
AT5G02820.1 | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, ...   176   1e-44
AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:2374332...   107   8e-24

>AT3G13170.1 | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI,
           subunit A protein | chr3:4231560-4234192 REVERSE
           LENGTH=362
          Length = 362

 Score =  348 bits (894), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 158/218 (72%), Positives = 191/218 (87%)

Query: 20  IVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQ 79
           +VMGW++F E  R +DC++S NTA+P+PV VEEV+DIVS+A YILVVEKE+VFQRLAND 
Sbjct: 142 LVMGWLKFREAGRKFDCLNSLNTAYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLANDM 201

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           FC  NRCI+ITGRGYPD+ TRRFLRLL++ LHLP +CLVDCDPYGF+IL TYRFGSMQMA
Sbjct: 202 FCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMA 261

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRL 199
           YD + LR P++ WLGAFPSDSE Y VPKQCLLPLT EDK++ EAMLLRCYL+RE+P+WRL
Sbjct: 262 YDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWRL 321

Query: 200 ELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIHGKV 237
           EL+ ML++GVKFE+EALSV +L+FL+E YIPSKI  +V
Sbjct: 322 ELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIRREV 359


>AT5G02820.1 | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI,
           subunit A protein | chr5:642658-644123 FORWARD
           LENGTH=427
          Length = 427

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 131/215 (60%), Gaps = 1/215 (0%)

Query: 20  IVMGWIRFFEGKRIYDCISSPNTAHPIPVHVEEVQDIVSVAHYILVVEKESVFQRLANDQ 79
           +V+G + F +   + DC         IP +++ V D+ S A +IL+VEK++ + RLA D+
Sbjct: 209 VVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYMRLAEDR 268

Query: 80  FCNANRCIIITGRGYPDIPTRRFLRLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMA 139
           F N   CII+T +G PD+ TR FLR +   L LP   LVD DPYG  IL+ Y  GS  M+
Sbjct: 269 FYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMS 328

Query: 140 YDTKHLRVPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRL 199
           YD+ +L  P+I WLG  PSD ++Y +P+QC LP+T +D +  + ML   ++++  P W  
Sbjct: 329 YDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKN-PGWVE 387

Query: 200 ELKLMLQKGVKFELEALSVRTLAFLTESYIPSKIH 234
           EL LM++   K E++ALS     +L+E Y+P K+ 
Sbjct: 388 ELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 422


>AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 |
           chr1:23743323-23745351 REVERSE LENGTH=383
          Length = 383

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 11/211 (5%)

Query: 30  GKRIYDCISSPNTAHPIPVHVEEVQDIV--SVAHYILVVEKESVFQRLANDQFCNANRCI 87
           GK   DC +  ++   I   +  + + +  + A YI++VEK ++F RL  D+  N   C+
Sbjct: 178 GKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCV 237

Query: 88  IITGRGYPDIPTRRFL-RLLVDNLHLPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLR 146
            IT +GYPDI TR FL R+      LP   LVD +P G  IL T++FGS+ M  +  +  
Sbjct: 238 FITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEA-YRY 296

Query: 147 VPEIHWLGAFPSDSERYLVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPRWRLELKLMLQ 206
              + W+G    D    L+P++ L+PL  +D +  +++L    LQ     +  EL LM+Q
Sbjct: 297 ACNVKWIGLRGDDLN--LIPEESLVPLKPKDSQIAKSLLSSKILQEN---YIEELSLMVQ 351

Query: 207 KGVKFELEALSVRTLAFLTESYIPSKI-HGK 236
            G + E+EAL      +L + YI +KI  GK
Sbjct: 352 TGKRAEIEALYCHGYNYLGK-YIATKIVQGK 381