Miyakogusa Predicted Gene

Lj0g3v0116289.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116289.2 Non Chatacterized Hit- tr|K4CXD2|K4CXD2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58.18,0.0000004,SUBFAMILY NOT NAMED,NULL; DEK PROTEIN,NULL;
seg,NULL; coiled-coil,NULL,CUFF.7134.2
         (782 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55660.1 | Symbols:  | DEK domain-containing chromatin associ...   235   1e-61
AT4G26630.2 | Symbols:  | DEK domain-containing chromatin associ...   201   1e-51
AT4G26630.1 | Symbols:  | DEK domain-containing chromatin associ...   201   1e-51
AT5G63550.2 | Symbols:  | DEK domain-containing chromatin associ...   184   2e-46
AT5G63550.1 | Symbols:  | DEK domain-containing chromatin associ...   184   2e-46
AT3G48710.1 | Symbols:  | DEK domain-containing chromatin associ...   178   2e-44

>AT5G55660.1 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr5:22539375-22543142 FORWARD
           LENGTH=778
          Length = 778

 Score =  235 bits (599), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 144/179 (80%), Gaps = 5/179 (2%)

Query: 384 RGKNNGEKV---TKKRKELKETEPRTPSIN-RPVRERKSVERLVTSMEKDASKEFHIEKG 439
           RGK   EK    TK  +E K+ EP+TP  + RPVRERKSVERLV  ++KD+S+EFH+EKG
Sbjct: 300 RGKGKTEKTRGKTKSDEEKKDIEPKTPFFSDRPVRERKSVERLVAVVDKDSSREFHVEKG 359

Query: 440 RGTPLKDIPNVAFKITRRKIDDNFKLLHTILFG-RRAKAIQVKSNILRFSGFVWHENEEK 498
           +GTPLKDIPNVA+K++R+K D+ FK LHTILFG +R KA Q+K++ILRFSG+ W  +EEK
Sbjct: 360 KGTPLKDIPNVAYKVSRKKSDEVFKQLHTILFGGKRVKATQLKAHILRFSGYKWQGDEEK 419

Query: 499 QMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTVLLAE 557
             +KVKEKF+K NKEKLLEFCDLFD+ +AK+TT+KEDI+ KLV+FL  P ATT VL+ E
Sbjct: 420 AKLKVKEKFEKINKEKLLEFCDLFDISVAKATTKKEDIVTKLVEFLEKPHATTDVLVNE 478


>AT4G26630.2 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr4:13430873-13434877 REVERSE
           LENGTH=763
          Length = 763

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 134/181 (74%), Gaps = 4/181 (2%)

Query: 377 KRSRKRERGKNNGEKVTKKRKE---LKETEPRTPSINRPVRERKSVERLVTSMEKDASKE 433
           K S+KR +G ++G KV +K K     K+ EPRTP  +RPVRERKSVERLV  ++KD+SKE
Sbjct: 281 KGSKKRGKGTSSGGKVREKNKTEEVKKDAEPRTPFSDRPVRERKSVERLVALIDKDSSKE 340

Query: 434 FHIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFG-RRAKAIQVKSNILRFSGFVW 492
           F +EKGRG  LKDIPNVA K+ R++ D+  KLLH ILFG RR KA Q+K+NIL FSGFVW
Sbjct: 341 FRVEKGRGAYLKDIPNVANKVMRKRSDETLKLLHPILFGGRRGKAAQIKTNILGFSGFVW 400

Query: 493 HENEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTT 552
           H +E+K   KVKEK +KC KEKL EFCD+ D+ I K+TT+KEDII KL +FL  P  T  
Sbjct: 401 HGDEKKAKEKVKEKLEKCTKEKLWEFCDVLDIHITKATTKKEDIITKLFEFLEKPHVTGD 460

Query: 553 V 553
           V
Sbjct: 461 V 461


>AT4G26630.1 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr4:13430873-13434877 REVERSE
           LENGTH=763
          Length = 763

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 134/181 (74%), Gaps = 4/181 (2%)

Query: 377 KRSRKRERGKNNGEKVTKKRKE---LKETEPRTPSINRPVRERKSVERLVTSMEKDASKE 433
           K S+KR +G ++G KV +K K     K+ EPRTP  +RPVRERKSVERLV  ++KD+SKE
Sbjct: 281 KGSKKRGKGTSSGGKVREKNKTEEVKKDAEPRTPFSDRPVRERKSVERLVALIDKDSSKE 340

Query: 434 FHIEKGRGTPLKDIPNVAFKITRRKIDDNFKLLHTILFG-RRAKAIQVKSNILRFSGFVW 492
           F +EKGRG  LKDIPNVA K+ R++ D+  KLLH ILFG RR KA Q+K+NIL FSGFVW
Sbjct: 341 FRVEKGRGAYLKDIPNVANKVMRKRSDETLKLLHPILFGGRRGKAAQIKTNILGFSGFVW 400

Query: 493 HENEEKQMIKVKEKFDKCNKEKLLEFCDLFDVPIAKSTTRKEDIIAKLVDFLGAPQATTT 552
           H +E+K   KVKEK +KC KEKL EFCD+ D+ I K+TT+KEDII KL +FL  P  T  
Sbjct: 401 HGDEKKAKEKVKEKLEKCTKEKLWEFCDVLDIHITKATTKKEDIITKLFEFLEKPHVTGD 460

Query: 553 V 553
           V
Sbjct: 461 V 461


>AT5G63550.2 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr5:25444805-25447934 FORWARD
           LENGTH=531
          Length = 531

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 113/154 (73%), Gaps = 3/154 (1%)

Query: 406 TPSINRPVRERKSVER--LVTSMEKDASKEFHIEKGRGTPLKDIPNVAFKITRRKIDDNF 463
           TP+  RP RERK VER  L T M    SK   IEKGRGTPL++IPNVA K+++RK DDN 
Sbjct: 95  TPTSERPTRERKKVERFSLSTPMRAPPSKSVSIEKGRGTPLREIPNVAHKLSKRKADDNL 154

Query: 464 KLLHTILFGRRAKAIQVKSNILRFSGFVWHEN-EEKQMIKVKEKFDKCNKEKLLEFCDLF 522
            LLHTILFG++AKA  VK NI +FSGF W E  EEKQ  ++KEK DKC KEKL+ FCD+ 
Sbjct: 155 MLLHTILFGKKAKAQMVKRNIGQFSGFAWSEKEEEKQRARIKEKIDKCVKEKLIVFCDVL 214

Query: 523 DVPIAKSTTRKEDIIAKLVDFLGAPQATTTVLLA 556
           D+PI++S  +KE++  K+++FL +P+ T  V++A
Sbjct: 215 DIPISRSNVKKEELAVKVLEFLESPKETRDVIIA 248


>AT5G63550.1 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr5:25444805-25447934 FORWARD
           LENGTH=530
          Length = 530

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 113/154 (73%), Gaps = 3/154 (1%)

Query: 406 TPSINRPVRERKSVER--LVTSMEKDASKEFHIEKGRGTPLKDIPNVAFKITRRKIDDNF 463
           TP+  RP RERK VER  L T M    SK   IEKGRGTPL++IPNVA K+++RK DDN 
Sbjct: 95  TPTSERPTRERKKVERFSLSTPMRAPPSKSVSIEKGRGTPLREIPNVAHKLSKRKADDNL 154

Query: 464 KLLHTILFGRRAKAIQVKSNILRFSGFVWHEN-EEKQMIKVKEKFDKCNKEKLLEFCDLF 522
            LLHTILFG++AKA  VK NI +FSGF W E  EEKQ  ++KEK DKC KEKL+ FCD+ 
Sbjct: 155 MLLHTILFGKKAKAQMVKRNIGQFSGFAWSEKEEEKQRARIKEKIDKCVKEKLIVFCDVL 214

Query: 523 DVPIAKSTTRKEDIIAKLVDFLGAPQATTTVLLA 556
           D+PI++S  +KE++  K+++FL +P+ T  V++A
Sbjct: 215 DIPISRSNVKKEELAVKVLEFLESPKETRDVIIA 248


>AT3G48710.1 | Symbols:  | DEK domain-containing chromatin
           associated protein | chr3:18041024-18043995 FORWARD
           LENGTH=462
          Length = 462

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 111/156 (71%), Gaps = 3/156 (1%)

Query: 404 PRTPSINRPVRERKSVERLV--TSMEKDASKEFHIEKGRGTPLKDIPNVAFKITRRKIDD 461
           P TP   RP+RERK   R V  T      +K   I +GRGT LK+IPNVA+K+++RK DD
Sbjct: 53  PVTPVSERPIRERKRTGRYVIDTPPRSSGNKPLSITQGRGTRLKEIPNVAYKLSKRKPDD 112

Query: 462 NFKLLHTILFGRRAKAIQVKSNILRFSGFVWHEN-EEKQMIKVKEKFDKCNKEKLLEFCD 520
           N  LLHTIL+G++AKA  +K NI +FSGFVW E  EEKQ  K KEK DKC KEKL++FCD
Sbjct: 113 NLFLLHTILYGKKAKAQMLKKNIGQFSGFVWSEQEEEKQRAKAKEKLDKCIKEKLIDFCD 172

Query: 521 LFDVPIAKSTTRKEDIIAKLVDFLGAPQATTTVLLA 556
           + D+P+ KST +KE++  ++++FL  P+AT  +LLA
Sbjct: 173 VLDIPVNKSTVKKEELAVRVLEFLVCPKATRDILLA 208