Miyakogusa Predicted Gene

Lj0g3v0116239.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116239.2 Non Chatacterized Hit- tr|D7TDB7|D7TDB7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,50,1e-16,no
description,Zinc finger, RING/FYVE/PHD-type; no
description,Homeodomain-like; MYB_LIKE,Myb-like d,CUFF.6822.2
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999266-100094...    79   7e-15
AT1G01150.1 | Symbols:  | Homeodomain-like protein with RING/FYV...    73   5e-13
AT4G12670.1 | Symbols:  | Homeodomain-like superfamily protein |...    69   9e-12
AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    57   2e-08
AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    57   2e-08
AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    55   8e-08

>AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999266-1000947
           REVERSE LENGTH=420
          Length = 420

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 389 RRRRLYWTDDEEKALKEGVLKFSLE-NQNIPWRKILEFGCGTFDKTRAPSDLKDKWKKMI 447
           +RRRL WT +EE+ LK GV KF+ E N+N+PWRKILE G   F +TR P+DLKDKW+ M+
Sbjct: 344 QRRRLLWTYEEEEMLKVGVEKFAAEANKNMPWRKILEMGEKVFHETRTPADLKDKWRSMV 403



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 52  TPDHRPEPEPVDLFDEDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSE----------P 101
           T D     EP  L D D CI C+ S+  +  C    C ++ H  C+ ++           
Sbjct: 57  TTDRGGSVEP--LLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYADLGSTSSSSSSS 114

Query: 102 KFDASGSFYCPYCWYKRAVNDCRQLRQKAMMAKEALTSFLD 142
             D S  F CPYCW K      + LR+K + A++A+  +LD
Sbjct: 115 SEDVSNPF-CPYCWLKIVALKSKTLREKTVEAEKAVCKYLD 154


>AT1G01150.1 | Symbols:  | Homeodomain-like protein with
           RING/FYVE/PHD-type zinc finger domain | chr1:70115-71998
           REVERSE LENGTH=345
          Length = 345

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 391 RRLYWTDDEEKALKEGVLKFS-LENQNIPWRKILEFGCGTFDKTRAPSDLKDKWKKM 446
           +R+ WT +EEK L+EGV KFS   N+N+PW+KILE G G F  TR  SDLKDKW+ M
Sbjct: 233 KRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 289



 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 47  DNVPM-------TPDHRPEPEPVDLFDEDICIGCDQSEGTLLVCSEKGCPIAIHASCIGS 99
           DNVP+       T D     EP++   E  CI CD ++  ++ CS   CP+A+H  C+  
Sbjct: 60  DNVPLKKRHYLGTSDTFRSFEPLN---EHACIVCDIADDGVVPCSGNECPLAVHRKCV-- 114

Query: 100 EPKFDASGSFYCPYCWYKRAVNDCRQLRQKAMMAKEALTSF 140
           E   +   +FYCPYCW+K        LR + + A + L  +
Sbjct: 115 ELDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQY 155


>AT4G12670.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:7472530-7474519 FORWARD LENGTH=499
          Length = 499

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 389 RRRRLYWTDDEEKALKEGVLKFSLENQNIPWRKILEFGCGTFDKTRAPSDLKDKWKKM 446
           +R+R +WT  E + L+ GV KF  E +NIPWRKIL+FG   F   RAPSDLKDKWK +
Sbjct: 414 KRKRRFWTLAEVEMLRVGVQKFPGE-RNIPWRKILQFGRDVFHDERAPSDLKDKWKTL 470


>AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 67  EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
           E++C  C++ EGTLL+CS   C   +H  C+      D  G+F CP CWY R   +  + 
Sbjct: 345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query: 127 RQKAMMAKEALT 138
           ++    AK  L 
Sbjct: 404 QKLISCAKRRLV 415


>AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 67  EDICIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQL 126
           E++C  C++ EGTLL+CS   C   +H  C+      D  G+F CP CWY R   +  + 
Sbjct: 345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query: 127 RQKAMMAKEALT 138
           ++    AK  L 
Sbjct: 404 QKLISCAKRRLV 415


>AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:25500378-25501544 REVERSE LENGTH=314
          Length = 314

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 70  CIGCDQSEGTLLVCSEKGCPIAIHASCIGSEPKFDASGSFYCPYCWYKRAVNDCRQLRQK 129
           C+ C +S G LL CS  GC + +H  C+ S P +  +G FYC  C       +  Q + +
Sbjct: 229 CVNCKES-GKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDE 287

Query: 130 AMMAKEALTSFL 141
              AK  L SFL
Sbjct: 288 VAKAKRKLVSFL 299