Miyakogusa Predicted Gene

Lj0g3v0116189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0116189.1 Non Chatacterized Hit- tr|I1J7R6|I1J7R6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,71.94,0,SSRCOGNITION,Structure-specific recognition protein;
STRUCTURE SPECIFIC RECOGNITION PROTEIN,NULL;
SW,NODE_69851_length_1065_cov_69.243195.path2.1
         (352 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility gr...   411   e-115

>AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group
           | chr3:10784954-10788498 FORWARD LENGTH=646
          Length = 646

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/350 (62%), Positives = 259/350 (74%), Gaps = 24/350 (6%)

Query: 3   DVHLFNNITLAGRGGTKDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIM 62
           DV L  ++        KDS  E SFH+PNSNTQ+V DE  P + V               
Sbjct: 146 DVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFVGDENRPPSQV--------------- 190

Query: 63  PMADVGDEIMPMADVDAGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQY 122
                 D I+ MADV  G EDAVVTFE I I TPRGRY+VELHLSF RL+G ANDFKIQY
Sbjct: 191 ----FNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFKIQY 246

Query: 123 SSIVRLYLLPKLNQPRTFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNT 182
           SS+VRL+LLPK NQP TFVVISLDPPIR+GQT+YPHIVMQFE+D VV+ EL+I+++L NT
Sbjct: 247 SSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDELMNT 306

Query: 183 KYNDKLELSYKGLIHGVFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLE 242
           K+ DKLE SYKGLIH VFTT+L  LSG+K+TKPG FRS   G+AVKSSLKAE+G LYPLE
Sbjct: 307 KFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDGVLYPLE 366

Query: 243 KSFFFLPKPPTLILHEEIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNK 302
           K FFFLPKPPTLILH+EIDY+ FE+H A G+ + YF LLIRLK++ EHLF NIQRNE++ 
Sbjct: 367 KGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQRNEYHN 426

Query: 303 LTAFIISKGLKLMDLRSAHAQPAVALARILG---NDDAVDPHLERIKNEA 349
           L  FI SKGLK+M+L    A  A  +A +LG   +DDAVDPHL RI+N+A
Sbjct: 427 LYTFISSKGLKIMNL--GGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQA 474