Miyakogusa Predicted Gene

Lj0g3v0115549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0115549.1 Non Chatacterized Hit- tr|I1KT07|I1KT07_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1241
PE=,40.71,0.000000000000003,F_box_assoc_1: F-box protein interaction
domain,F-box associated interaction domain,CUFF.6753.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32600.1 | Symbols:  | F-box associated ubiquitination effect...    57   3e-09

>AT1G32600.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr1:11794802-11795683 FORWARD
           LENGTH=293
          Length = 293

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 11  TGLRFNKIPPLIHAGFFSLNYGFVYDISCDTYKVVVLLNEPLDQRVCKTMVHCIGESCWR 70
           T  +F ++P +I  G      GF YD   D YK+V ++++       KT +    ES WR
Sbjct: 68  TSTKFKRVP-MIKRGQTQNLLGFGYDRVLDDYKIVTIIDK-------KTYIFTFKESSWR 119

Query: 71  EILSIPDSPIDFRHSNGLFVGGCVNWLA----RQLVIISLDMRQETYRLLSLPEGISEL 125
           E   IP S   F+   G  V  C+ W+A    ++  I+  D   E Y  L++P  +S L
Sbjct: 120 ESKLIPSSDCFFKERTGTVVDNCMYWIANRFNKEKFILCFDFVNEEYSKLNVPMMLSGL 178