Miyakogusa Predicted Gene

Lj0g3v0115469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0115469.1 tr|A9SB45|A9SB45_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163909,30.9,3e-18,Xpo1,Exportin-1/Importin-beta-like;
seg,NULL; UNCHARACTERIZED,NULL; TRANSPORTIN 3 AND IMPORTIN
13,NU,CUFF.6751.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12930.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   286   9e-78
AT5G62600.1 | Symbols:  | ARM repeat superfamily protein | chr5:...    59   6e-09

>AT1G12930.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:4398588-4405495 REVERSE LENGTH=1005
          Length = 1005

 Score =  286 bits (733), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 206/301 (68%), Gaps = 10/301 (3%)

Query: 9   FKLQIQNEGYQLQXXXXXXXXXXXXXXVQRFSSGPPQLLTQICLALSALILQVVAHGNPI 68
            + +IQNE   LQ               +R+SSG PQLLTQICLALSAL+L    +  P 
Sbjct: 65  LRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHSDPYSKPF 124

Query: 69  EQLFYSLQNLQSQDGGNMAVLEMLTVLPEEVVDSQRIDSKMSSLHKSHYTQELLSHTSMV 128
           ++L ++LQNLQ+ D GN+ +LE+LTVLPEE+ D++         H S   QELLSHTSMV
Sbjct: 125 DKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTRHFS------HHSDLRQELLSHTSMV 178

Query: 129 LEFLRQQSEINSDGSVQHHERNKKILRCFLSWIRAGCFSEISSGTLPAHPLLNFVFNSLQ 188
           L+FL QQSE      +  H+ N+KILRC LSW+RAGCFSEI  G +P+HPLLN+VFN+LQ
Sbjct: 179 LDFLLQQSENQFVSPLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPLLNYVFNALQ 238

Query: 189 VPLTFDLAIEVLVELGTKHEGLPQILLCRVHYLKEVLLFPALTRGDMKVIGGVACLLSEI 248
              TFDLAIEVLVEL T+HE LPQ+LL +V +L++ LL PAL   D+K+I G+ACL+SEI
Sbjct: 239 -GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIISGLACLMSEI 297

Query: 249 GQAAPSLIVEXXXXXXXXXXXXXSCVAFPCEDWEIADSTLQFWSTLASYIL---GIDEDD 305
           GQAAP LIVE             SCV FP EDWEIADST+QFWST A+YIL   G  ++D
Sbjct: 298 GQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYILSLGGNRQND 357

Query: 306 R 306
           R
Sbjct: 358 R 358


>AT5G62600.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:25123337-25132473 REVERSE LENGTH=958
          Length = 958

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 38/275 (13%)

Query: 36  VQRFSSGPPQLLTQICLALSALILQVVA----HGNPIEQLFYSLQNLQSQDGGNMAVLEM 91
           +++F  GPP++ TQI +A++AL + V A     G  I  L   +        G    LE+
Sbjct: 91  LKKFHKGPPKVRTQISIAVAALAVHVPAADWGDGGIISWLRDEMHMHPEYVPG---FLEL 147

Query: 92  LTVLPEEVVDSQRIDSKMSSLHKSHYTQELLSHTSMVLEFLRQQSEINSDGSVQHHERNK 151
           LTVLPEE  +  +I ++     +  + +EL S     L  L    +I+        E  +
Sbjct: 148 LTVLPEETFN-YKIAARPD--RRRQFEKELTSQMEAALSILSACLKIS--------ELKE 196

Query: 152 KILRCFLSWIRAGCFSEISSGTLPAHPLLNFVFNSLQVPLTFDLAIEVLVELGTKHEGLP 211
           ++L  F SW+R      I    L  HPL++   +SL      + ++ V+ EL   H   P
Sbjct: 197 QVLEAFASWLRLR--HGIPGTVLACHPLVHAALSSLNCDPLSEASVNVISEL-IHHTASP 253

Query: 212 ------------QILLCRVHYLKEVLLFPALTRGDMKVIGGVACLLSEIGQAAPSLIVEX 259
                       Q+++ ++  L+  L   +    D+K IG    L +++G +   LI   
Sbjct: 254 SSGGISAQTPLIQVIVPQILSLQAHLRDSSKDEEDVKAIGR---LFADVGDSYVELIATG 310

Query: 260 XXXXXXXXXXXXSCVAFPCEDWEIADSTLQFWSTL 294
                          A P  +++IA  T  FW +L
Sbjct: 311 SDEPMVIVHALLEVTAHP--EFDIASMTFNFWHSL 343