Miyakogusa Predicted Gene

Lj0g3v0114949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0114949.1 tr|Q7XM15|Q7XM15_ORYSJ OSJNBa0084K01.16 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0084K01.16
,100,0,PHF5,PHF5-like; FAMILY NOT NAMED,PHF5-like,CUFF.6717.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30000.1 | Symbols:  | PHF5-like protein | chr2:12804042-1280...   223   3e-59
AT1G07170.3 | Symbols:  | PHF5-like protein | chr1:2200686-22010...   223   3e-59
AT1G07170.2 | Symbols:  | PHF5-like protein | chr1:2200686-22010...   223   3e-59
AT1G07170.1 | Symbols:  | PHF5-like protein | chr1:2200686-22010...   223   3e-59

>AT2G30000.1 | Symbols:  | PHF5-like protein |
           chr2:12804042-12804374 REVERSE LENGTH=110
          Length = 110

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110


>AT1G07170.3 | Symbols:  | PHF5-like protein | chr1:2200686-2201018
           FORWARD LENGTH=110
          Length = 110

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110


>AT1G07170.2 | Symbols:  | PHF5-like protein | chr1:2200686-2201018
           FORWARD LENGTH=110
          Length = 110

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110


>AT1G07170.1 | Symbols:  | PHF5-like protein | chr1:2200686-2201018
           FORWARD LENGTH=110
          Length = 110

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110