Miyakogusa Predicted Gene

Lj0g3v0114199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0114199.1 Non Chatacterized Hit- tr|I1NCM0|I1NCM0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5088
PE=,64.18,4e-19,RING/U-box,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; SEVEN IN ABSENTIA HOMOLOG,Seven-in-,CUFF.6648.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61790.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    99   6e-22
AT4G27880.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    96   9e-21
AT2G41980.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    94   3e-20
AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis...    92   1e-19
AT1G66620.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    60   4e-10
AT5G37890.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    58   2e-09
AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    57   3e-09
AT1G66610.1 | Symbols:  | TRAF-like superfamily protein | chr1:2...    57   4e-09
AT1G66610.2 | Symbols:  | TRAF-like superfamily protein | chr1:2...    56   9e-09
AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    54   3e-08
AT1G66660.2 | Symbols:  | Protein with RING/U-box and TRAF-like ...    54   5e-08
AT1G66630.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    53   6e-08
AT5G37930.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    52   2e-07
AT1G66650.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    49   8e-07
AT5G62800.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...    47   4e-06

>AT3G61790.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr3:22871974-22873543 REVERSE LENGTH=326
          Length = 326

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 49/59 (83%)

Query: 46  VSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
            ++SV ELLECPVC N+MYPPIHQC NGHT+CS CK RVHNRCPTCR ELG+I  L ++
Sbjct: 53  TTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALE 111


>AT4G27880.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr4:13883623-13884927 FORWARD LENGTH=327
          Length = 327

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 47  SSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           ++SV ELLECPVC  +MYPPIHQC NGHT+CS CK RVHNRCPTCR ELG+I  L ++
Sbjct: 55  ATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALE 112


>AT2G41980.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr2:17523494-17524692 REVERSE LENGTH=305
          Length = 305

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 47  SSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           S+ V ELLECPVC N MYPPIHQC NGHT+CS CK RV N CPTCR+ELGNI  L ++
Sbjct: 48  SNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALE 105


>AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis 2
           | chr3:21489612-21491085 FORWARD LENGTH=308
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 46/58 (79%)

Query: 47  SSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           ++ V ELLECPVC N MYPPIHQC NGHT+CS CK RV N CPTCR+ELGNI  L ++
Sbjct: 51  NNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALE 108


>AT1G66620.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr1:24852806-24854044 REVERSE LENGTH=313
          Length = 313

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 13  SKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSN 72
            +A     + + +   +E V +     +  +GT+     +LL+CP+C +A+  PI QC N
Sbjct: 3   GEASTSRRKRQRVPSSVESVENGGGDAVARSGTLFE--LDLLDCPICCHALTSPIFQCDN 60

Query: 73  GHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           GH  CS C  ++ N+CP+C   +GN  + +++
Sbjct: 61  GHIACSSCCTKLRNKCPSCALPIGNFRSRIME 92


>AT5G37890.1 | Symbols:  | Protein with RING/U-box and TRAF-like
          domains | chr5:15090512-15091822 REVERSE LENGTH=286
          Length = 286

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 33 NDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCR 92
          +D A+   K   T+   + E+L+CP+C  A   PI QC NGH  CS C P+++N+CP C 
Sbjct: 29 SDAAKRDAKKRSTMLMDL-EILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACT 87

Query: 93 HELGN 97
            +G+
Sbjct: 88 SPVGH 92


>AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr5:15073764-15074851 REVERSE LENGTH=281
          Length = 281

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVDMSL 107
           ++L+CP+C  A+  P+ QC NGH  CS C P++ N+CP C   +G+I    ++  L
Sbjct: 41  DILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVL 96


>AT1G66610.1 | Symbols:  | TRAF-like superfamily protein |
           chr1:24849716-24851450 REVERSE LENGTH=366
          Length = 366

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           +LL+CP+C NA+  PI QC  GH  CS C   V N+CP C   +GN  + +++
Sbjct: 52  DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIME 104


>AT1G66610.2 | Symbols:  | TRAF-like superfamily protein |
           chr1:24850221-24851450 REVERSE LENGTH=237
          Length = 237

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           +LL+CP+C NA+  PI QC  GH  CS C   V N+CP C   +GN  + +++
Sbjct: 52  DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIME 104



 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 42  PNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISAL 101
           P+GT+S    +LL+CPVC  A+   I QC NGH  CS C   +  +CP+C   +GN   +
Sbjct: 149 PSGTLSQ--LDLLDCPVCSKALKISIFQCDNGHVACSSCCIELRYKCPSCSLPIGNYRCI 206

Query: 102 VVD 104
           +++
Sbjct: 207 IME 209


>AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like
          domains | chr5:15096210-15097318 REVERSE LENGTH=276
          Length = 276

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 52 ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGN 97
          ++L+CP+C  A+  PI QC NGH  C  C P++ N+CP C   +G+
Sbjct: 34 DILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGH 79


>AT1G66660.2 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr1:24862056-24863332 REVERSE LENGTH=348
          Length = 348

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query: 31  LVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPT 90
           +  D    + K +  V     ++L+CP C   +  PI+QCSNGH  CS C  +++ +C  
Sbjct: 81  VTTDEQSGSPKSSQPVKLQSSDVLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSF 140

Query: 91  CRHELGNISALVVDMSLVTSDV 112
           CR  +G+I    ++  +  S V
Sbjct: 141 CRCNIGDIRCRAMEKVIEASIV 162


>AT1G66630.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr1:24855479-24856714 REVERSE LENGTH=303
          Length = 303

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           +LL+CP+C + +  PI+QC NGH  CS C  +V  +CP C   +G   + +++
Sbjct: 45  DLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILE 97


>AT5G37930.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr5:15102239-15103651 REVERSE LENGTH=349
          Length = 349

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 52  ELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVDMSLVTSD 111
           ++L+CP+C   +  PI QC NGH  C+ C  +V NRCP+C   +G +    ++  +  S 
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASR 168

Query: 112 V 112
           V
Sbjct: 169 V 169


>AT1G66650.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr1:24860113-24861821 REVERSE LENGTH=329
          Length = 329

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 16  DVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRE---------------LLECPVCL 60
           D  P + EE T V+   +  ++   KP G V  + R+               +LECP C 
Sbjct: 31  DPSPGEEEEKTLVVLTDDSDSEEDDKPLGDVLRTCRKRRVSSPKSVTLPNSNVLECPNCF 90

Query: 61  NAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNISALVVD 104
           + +  PI QC+NGH  C  C  ++  RC  C+  +G++    ++
Sbjct: 91  DPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAME 134


>AT5G62800.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr5:25218663-25219967 FORWARD LENGTH=348
          Length = 348

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 43  NGTVSSSVREL--LECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRC--PTCRHELGNI 98
           N T S+ + +L  L+CPVC   +  P  QC +GH +C+ C  +V N+C  P C   +GN 
Sbjct: 28  NETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNK 87

Query: 99  SALVVDMSLVTSDV 112
               ++  L ++ V
Sbjct: 88  RCFAMERVLESAFV 101