Miyakogusa Predicted Gene

Lj0g3v0114179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0114179.1 Non Chatacterized Hit- tr|B7FJB0|B7FJB0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,88.34,0,Cyclin-like,Cyclin-like; Cyclin,Cyclin PHO80-like; no
description,Cyclin-like; seg,NULL; SUBFAMILY N,CUFF.6703.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 | chr2:18591688-185...   316   8e-87
AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379846-223...   311   3e-85
AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-184...   127   4e-30
AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704...   125   2e-29
AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 | chr5:24778...   124   4e-29
AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358418-2359...   119   1e-27
AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23323143-233...   108   3e-24
AT3G05327.1 | Symbols:  | Cyclin family protein | chr3:1517581-1...   100   1e-21

>AT2G45080.1 | Symbols: cycp3;1 | cyclin p3;1 |
           chr2:18591688-18592443 FORWARD LENGTH=222
          Length = 222

 Score =  316 bits (809), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 177/223 (79%), Gaps = 9/223 (4%)

Query: 10  LTISPRKLRYDLYSYSYQEDSNT-PLVINVLSSLIERNMARTKRIVKNCSRSLSKAISAN 68
           L ISPRKLR DLYSYSYQ+DSNT PLVI+VLSSLIER +AR +RI    SRS        
Sbjct: 4   LAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERI----SRSYGGFGKTR 59

Query: 69  IFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLIT 128
           +FDCREIPDMTIQSYLERIFRYT+AGPSVYVVAYVYIDRFCQNN GFRI+  NVHRLLIT
Sbjct: 60  VFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLIT 119

Query: 129 TIMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLE 188
           TIM+ASKYVEDMNY+NSYFA+VGG               +MGFKLHVNVSVFESYCCHLE
Sbjct: 120 TIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLE 179

Query: 189 REVSIGGGYHIERTLRCAEEIKTRQI----EERGYTQIARVML 227
           REVSIGGGY IE+ LRCAEEIK+RQI    +   + Q +R+ML
Sbjct: 180 REVSIGGGYQIEKALRCAEEIKSRQIVQDPKHHHHHQFSRIML 222


>AT3G60550.1 | Symbols: CYCP3;2 | cyclin p3;2 |
           chr3:22379846-22380641 FORWARD LENGTH=230
          Length = 230

 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 153/224 (68%), Positives = 172/224 (76%), Gaps = 6/224 (2%)

Query: 10  LTISPRKLRYDLYSYSYQEDSNTPLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANI 69
           LTISPRKLR DLYSYSYQ +S TPLVI+VLSSLI+R + R +RI +    S        I
Sbjct: 7   LTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQI 66

Query: 70  FDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITT 129
           FDCREIPDMTIQSYL RIFRYT+AGPSVYVVAYVYIDRFCQ NPGFRI+  NVHRLLITT
Sbjct: 67  FDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITT 126

Query: 130 IMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLER 189
           IM+ASKYVED+NYRNSYFA+VGG               +MGFKLHVNVSVFESYCCHLER
Sbjct: 127 IMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLER 186

Query: 190 EVSIGGGYHIERTLRCAEEIKTRQI------EERGYTQIARVML 227
           EVS GGGY IE+ LRCAEEIK+RQ+          + Q+AR++L
Sbjct: 187 EVSFGGGYQIEKALRCAEEIKSRQMIIQDPKHHHHHHQLARILL 230


>AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 |
           chr2:18442287-18443304 REVERSE LENGTH=202
          Length = 202

 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 101/159 (63%), Gaps = 4/159 (2%)

Query: 35  VINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIFRYTRAG 94
           +I  LSSL+ER +A +  + +   R  +++   ++F     P +TIQSYLERIF+Y    
Sbjct: 13  LIAFLSSLLER-VAESNDLTR---RVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCS 68

Query: 95  PSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFARVGGXX 154
           PS +VVAYVY+DRF    P   IN+ NVHRLLIT++MVA+K+++D+ Y N+Y+A+VGG  
Sbjct: 69  PSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGIS 128

Query: 155 XXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREVSI 193
                         +GF+L+V  + F +Y  +L++E+++
Sbjct: 129 TKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167


>AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704813
           REVERSE LENGTH=210
          Length = 210

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 29  DSNTPLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIF 88
           ++ TP V+ ++S ++E+ +AR + + K  ++   K++ A  F     P ++I  YLERI+
Sbjct: 21  EAATPRVLTIISHVMEKLVARNEWLAKQ-TKGFGKSLEA--FHGVRAPSISIAKYLERIY 77

Query: 89  RYTRAGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFA 148
           +YT+  P+ +VV YVYIDR    +PG  + + NVHRLL+T +M+A+K ++D++Y N ++A
Sbjct: 78  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYA 137

Query: 149 RVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREVSI 193
           RVGG               ++ F++ V+  VFESYC HLE+E+ +
Sbjct: 138 RVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182


>AT5G61650.1 | Symbols: CYCP4;2, CYCP4 | CYCLIN P4;2 |
           chr5:24778265-24779019 FORWARD LENGTH=219
          Length = 219

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 8/161 (4%)

Query: 33  PLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIFRYTR 92
           P V+  +S L++R        V   + +LS+    + F     P ++I+SYLERIF Y  
Sbjct: 23  PSVLTAMSYLLQR--------VSETNDNLSQKQKPSSFTGVTKPSISIRSYLERIFEYAN 74

Query: 93  AGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFARVGG 152
              S Y+VAY+Y+DRF +  P   IN+ NVHRL+IT+++V++K+++D++Y N Y+A+VGG
Sbjct: 75  CSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGG 134

Query: 153 XXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREVSI 193
                           +GF+L+V VS F +YCC L+RE+++
Sbjct: 135 ISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175


>AT5G07450.1 | Symbols: CYCP4;3 | cyclin p4;3 | chr5:2358418-2359253
           REVERSE LENGTH=216
          Length = 216

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 4/165 (2%)

Query: 33  PLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIFRYTR 92
           P VI  +SSL++R          + SR   +    + F+    P ++I+SY+ERIF+Y  
Sbjct: 21  PNVITAMSSLLQR----VSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYAD 76

Query: 93  AGPSVYVVAYVYIDRFCQNNPGFRINARNVHRLLITTIMVASKYVEDMNYRNSYFARVGG 152
              S Y+VAY+Y+DRF Q  P   I++ NVHRL+IT+++V++K+++D+ Y N+++A+VGG
Sbjct: 77  CSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGG 136

Query: 153 XXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREVSIGGGY 197
                           +GF+L+V +S +  YC  L+RE+ +   Y
Sbjct: 137 ITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMY 181


>AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 |
           chr3:23323143-23323893 REVERSE LENGTH=221
          Length = 221

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%)

Query: 61  LSKAISANIFDCREIPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQNNPGFRINAR 120
           L    S  +FD R  P+++I  YL+RIF+Y+   PS +V+A++YID F        +   
Sbjct: 56  LGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRAL-LKPL 114

Query: 121 NVHRLLITTIMVASKYVEDMNYRNSYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVF 180
           NVHRL+ITT+M+A+K  +D  + N+Y+ARVGG                + FKL V+   F
Sbjct: 115 NVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTF 174

Query: 181 ESYCCHLEREVSIGGGYHIERTLRCA 206
            ++CC LE++     G+ IE  ++ A
Sbjct: 175 HTHCCQLEKQNR--DGFQIEWPIKEA 198


>AT3G05327.1 | Symbols:  | Cyclin family protein |
           chr3:1517581-1518399 REVERSE LENGTH=212
          Length = 212

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 29  DSNTPLVINVLSSLIERNMARTKRIVKNCSRSLSKAISANIFDCREIPDMTIQSYLERIF 88
           DS  P VI +L+S +E+ + + K   K      +KA    +F   + P ++I  Y ERI 
Sbjct: 27  DSTPPRVITLLASTLEKMIQKNK---KKFHTRHNKADEITMFHGSKAPSLSIYRYTERIH 83

Query: 89  RYTRAGPSVYVVAYVYIDRFCQ----NNPGFRINARNVHRLLITTIMVASKYVEDMNYRN 144
           RY +  P  +V A+ YI R+ Q     +   R+ + NVHRLLIT+++VA+K++E   Y N
Sbjct: 84  RYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLERQCYNN 143

Query: 145 SYFARVGGXXXXXXXXXXXXXXXMMGFKLHVNVSVFESYCCHLEREV 191
           +Y+A++GG                + F+L++    FE +C  L++E 
Sbjct: 144 AYYAKIGGVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKET 190