Miyakogusa Predicted Gene

Lj0g3v0113699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0113699.1 Non Chatacterized Hit- tr|B9T8F4|B9T8F4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,83.33,3e-19,UNCHARACTERIZED,NULL; LMBR1,LMBR1-like membrane protein;
seg,NULL,CUFF.6612.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65290.1 | Symbols:  | LMBR1-like membrane protein | chr5:260...   179   4e-46
AT5G65290.2 | Symbols:  | LMBR1-like membrane protein | chr5:260...   178   7e-46

>AT5G65290.1 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26094337 FORWARD LENGTH=733
          Length = 733

 Score =  179 bits (454), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 111/139 (79%), Gaps = 3/139 (2%)

Query: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSVIILVPADIWATMS- 59
           MWVFYLISLPLT G+V+FTLRYFAGP++PRYVL TVGYTWFCS+SVIIL PADIW T+S 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 60  --SHSENGGIXXXXXXXXXXXXXXXXAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLI 117
              H ENG I                AVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYL+
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLV 120

Query: 118 VGSIGLFGLVLLIMMHRSW 136
           +G IGL GL+LLIMMHR+W
Sbjct: 121 LGFIGLLGLILLIMMHRNW 139


>AT5G65290.2 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26093617 FORWARD LENGTH=548
          Length = 548

 Score =  178 bits (452), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 111/139 (79%), Gaps = 3/139 (2%)

Query: 1   MWVFYLISLPLTTGMVLFTLRYFAGPDVPRYVLFTVGYTWFCSLSVIILVPADIWATMS- 59
           MWVFYLISLPLT G+V+FTLRYFAGP++PRYVL TVGYTWFCS+SVIIL PADIW T+S 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 60  --SHSENGGIXXXXXXXXXXXXXXXXAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLI 117
              H ENG I                AVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYL+
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLV 120

Query: 118 VGSIGLFGLVLLIMMHRSW 136
           +G IGL GL+LLIMMHR+W
Sbjct: 121 LGFIGLLGLILLIMMHRNW 139