Miyakogusa Predicted Gene
- Lj0g3v0113539.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0113539.1 tr|Q9LMT2|Q9LMT2_ARATH At1g17980 OS=Arabidopsis
thaliana GN=F2H15.20 PE=2 SV=1,74.14,5e-19,PAP_RNA-bind,Poly(A)
polymerase, RNA-binding domain; PAP/Archaeal CCA-adding enzyme,
C-terminal doma,CUFF.6601.1
(74 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877... 99 9e-22
AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877... 98 1e-21
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 62 1e-10
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras... 61 1e-10
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4... 61 1e-10
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:... 61 1e-10
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026... 61 2e-10
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026... 60 2e-10
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026... 60 2e-10
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026... 60 2e-10
>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
chr1:6187742-6191418 REVERSE LENGTH=713
Length = 713
Score = 98.6 bits (244), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/58 (74%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTL 57
ML CHPHP DF D SRPL+C YFMGLQRKQG P EGEQFDIR +E+FKHT+N YTL
Sbjct: 403 MLHCHPHPHDFQDTSRPLHCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTL 460
>AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 |
chr1:6187742-6190318 REVERSE LENGTH=586
Length = 586
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/58 (74%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 1 MLQCHPHPGDFSDKSRPLYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTL 57
ML CHPHP DF D SRPL+C YFMGLQRKQG P EGEQFDIR +E+FKHT+N YTL
Sbjct: 276 MLHCHPHPHDFQDTSRPLHCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTL 333
>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854443 FORWARD LENGTH=765
Length = 765
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854351 FORWARD LENGTH=738
Length = 738
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854351 FORWARD LENGTH=738
Length = 738
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854351 FORWARD LENGTH=745
Length = 745
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854351 FORWARD LENGTH=745
Length = 745
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854351 FORWARD LENGTH=735
Length = 735
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
chr4:15850134-15854375 FORWARD LENGTH=741
Length = 741
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15853810 FORWARD LENGTH=730
Length = 730
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15854266 FORWARD LENGTH=745
Length = 745
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
chr4:15850134-15853906 FORWARD LENGTH=716
Length = 716
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1 MLQCHPHPGDFSDKSRP-LYCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMY 55
ML CHP P ++ D +R L+C +FMGLQR +G E +QFDIR +++F+ +NMY
Sbjct: 414 MLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMY 470
>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
chr2:11026048-11030440 REVERSE LENGTH=787
Length = 787
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTLR 58
ML CHP P ++ D S+ +C +FMGLQR G E +QFDIR +++F+ +NMY
Sbjct: 416 MLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFW 475
Query: 59 R 59
R
Sbjct: 476 R 476
>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
chr2:11026048-11030440 REVERSE LENGTH=786
Length = 786
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTLR 58
ML CHP P ++ D S+ +C +FMGLQR G E +QFDIR +++F+ +NMY
Sbjct: 416 MLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFW 475
Query: 59 R 59
R
Sbjct: 476 R 476
>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
chr2:11026048-11030440 REVERSE LENGTH=797
Length = 797
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTLR 58
ML CHP P ++ D S+ +C +FMGLQR G E +QFDIR +++F+ +NMY
Sbjct: 416 MLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFW 475
Query: 59 R 59
R
Sbjct: 476 R 476
>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
chr2:11026123-11030440 REVERSE LENGTH=800
Length = 800
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 MLQCHPHPGDFSDKSRPL-YCYYFMGLQRKQG-PFNEGEQFDIRLAIEKFKHTINMYTLR 58
ML CHP P ++ D S+ +C +FMGLQR G E +QFDIR +++F+ +NMY
Sbjct: 416 MLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFW 475
Query: 59 R 59
R
Sbjct: 476 R 476