Miyakogusa Predicted Gene

Lj0g3v0113419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0113419.1 Non Chatacterized Hit- tr|K3YRZ9|K3YRZ9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si017043,42.86,4e-19,seg,NULL; NHL REPEAT-CONTAINING PROTEIN,NULL;
FAMILY NOT NAMED,NULL; no description,Six-bladed beta-,CUFF.6592.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70280.2 | Symbols:  | NHL domain-containing protein | chr1:2...   179   9e-46
AT1G23880.1 | Symbols:  | NHL domain-containing protein | chr1:8...   169   6e-43
AT5G14890.1 | Symbols:  | NHL domain-containing protein | chr5:4...   169   8e-43
AT1G70280.1 | Symbols:  | NHL domain-containing protein | chr1:2...   152   8e-38
AT3G14860.1 | Symbols:  | NHL domain-containing protein | chr3:4...   111   2e-25
AT3G14860.2 | Symbols:  | NHL domain-containing protein | chr3:4...   111   2e-25
AT1G23890.2 | Symbols:  | NHL domain-containing protein | chr1:8...    64   4e-11
AT1G23890.1 | Symbols:  | NHL domain-containing protein | chr1:8...    64   4e-11

>AT1G70280.2 | Symbols:  | NHL domain-containing protein |
           chr1:26466086-26468471 REVERSE LENGTH=509
          Length = 509

 Score =  179 bits (453), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 107/126 (84%)

Query: 29  KIVTGVVSNVVSALVKWLWSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVE 88
           KI+ G +SN  S+L+KWLWSLK+T K     RSM+KFE+GY+VET+FDGSKLG EP+S+E
Sbjct: 30  KILNGFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYSIE 89

Query: 89  VSPDGEFLVLDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGIT 148
           V P+GE L+LDSENSNIYKI S +S YSRP+L+ GSPEGY GH+DGRLR+A++NHPKG+T
Sbjct: 90  VLPNGELLILDSENSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKGLT 149

Query: 149 VDGRGN 154
           VD RGN
Sbjct: 150 VDDRGN 155


>AT1G23880.1 | Symbols:  | NHL domain-containing protein |
           chr1:8436125-8438636 FORWARD LENGTH=545
          Length = 545

 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 104/128 (81%), Gaps = 2/128 (1%)

Query: 29  KIVTGVVSNVVSALVKWLWSL--KSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHS 86
           KIV   +SN  ++L+KWLWSL  K+T K     +SM+KFE+GY+VET+ DGSKLG EP+S
Sbjct: 90  KIVNSFISNHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVLDGSKLGIEPYS 149

Query: 87  VEVSPDGEFLVLDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKG 146
           ++V  +GE L+LDS+NSNIY+I S +S YSRP+L+ GSPEGY GH+DGRLR+AR+N+PKG
Sbjct: 150 IQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLNNPKG 209

Query: 147 ITVDGRGN 154
           +TVD RGN
Sbjct: 210 LTVDDRGN 217


>AT5G14890.1 | Symbols:  | NHL domain-containing protein |
           chr5:4818056-4821534 FORWARD LENGTH=754
          Length = 754

 Score =  169 bits (427), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 107/133 (80%), Gaps = 7/133 (5%)

Query: 29  KIVTGVVSNVVSALVKWLWSLKSTA------KPVQHGRSMMKFESGYNVETIFDGSKLGF 82
           KIV+G+V+NV S L KWLWSL+++       K     RSM+K+ESGYN+ET+FDGSKLG 
Sbjct: 32  KIVSGLVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNMETVFDGSKLGI 91

Query: 83  EPHSVEVSPDG-EFLVLDSENSNIYKIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARM 141
           EP+++EVSP+G E +VLDSENSNI+KI  P+SRY +PKLL+GS EGY GH+DG+L+EARM
Sbjct: 92  EPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGSQEGYTGHVDGKLKEARM 151

Query: 142 NHPKGITVDGRGN 154
           N P+G+ +D RGN
Sbjct: 152 NRPRGLAMDDRGN 164


>AT1G70280.1 | Symbols:  | NHL domain-containing protein |
           chr1:26466086-26468116 REVERSE LENGTH=447
          Length = 447

 Score =  152 bits (384), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 84/93 (90%)

Query: 62  MMKFESGYNVETIFDGSKLGFEPHSVEVSPDGEFLVLDSENSNIYKIPSPISRYSRPKLL 121
           M+KFE+GY+VET+FDGSKLG EP+S+EV P+GE L+LDSENSNIYKI S +S YSRP+L+
Sbjct: 1   MVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPRLV 60

Query: 122 AGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
            GSPEGY GH+DGRLR+A++NHPKG+TVD RGN
Sbjct: 61  TGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGN 93


>AT3G14860.1 | Symbols:  | NHL domain-containing protein |
           chr3:4998591-5000894 REVERSE LENGTH=492
          Length = 492

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 76/108 (70%)

Query: 47  WSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVEVSPDGEFLVLDSENSNIY 106
           W+  S++K  Q   ++++FE+GY VET+ +G+ +G  P+ + VS DGE   +D  NSNI 
Sbjct: 55  WTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIM 114

Query: 107 KIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
           KI  P+S+YSR +L+AGS +G  GH DG+  EAR NHP+G+T+D +GN
Sbjct: 115 KITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGN 162


>AT3G14860.2 | Symbols:  | NHL domain-containing protein |
           chr3:4998591-5000894 REVERSE LENGTH=493
          Length = 493

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 76/108 (70%)

Query: 47  WSLKSTAKPVQHGRSMMKFESGYNVETIFDGSKLGFEPHSVEVSPDGEFLVLDSENSNIY 106
           W+  S++K  Q   ++++FE+GY VET+ +G+ +G  P+ + VS DGE   +D  NSNI 
Sbjct: 55  WTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIM 114

Query: 107 KIPSPISRYSRPKLLAGSPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
           KI  P+S+YSR +L+AGS +G  GH DG+  EAR NHP+G+T+D +GN
Sbjct: 115 KITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGN 162


>AT1G23890.2 | Symbols:  | NHL domain-containing protein |
           chr1:8438900-8440803 REVERSE LENGTH=400
          Length = 400

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 65  FESGYNVETIFDGSKLGFEPHSVEVSP-DGEFLVLDSENSNIYKIPSPISRYSRPKLLAG 123
            E GY V T+ DG K G  P+++   P     +VLDS  S  Y    P+S  S     AG
Sbjct: 25  LEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAG 84

Query: 124 SPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
             +G  GH+DG+   +R + P+G  VD +GN
Sbjct: 85  --DGSSGHVDGKAGNSRFSKPRGFAVDAKGN 113


>AT1G23890.1 | Symbols:  | NHL domain-containing protein |
           chr1:8439321-8440803 REVERSE LENGTH=261
          Length = 261

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 65  FESGYNVETIFDGSKLGFEPHSVEVSP-DGEFLVLDSENSNIYKIPSPISRYSRPKLLAG 123
            E GY V T+ DG K G  P+++   P     +VLDS  S  Y    P+S  S     AG
Sbjct: 25  LEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAG 84

Query: 124 SPEGYIGHIDGRLREARMNHPKGITVDGRGN 154
             +G  GH+DG+   +R + P+G  VD +GN
Sbjct: 85  --DGSSGHVDGKAGNSRFSKPRGFAVDAKGN 113