Miyakogusa Predicted Gene

Lj0g3v0112359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112359.1 tr|A9RFZ1|A9RFZ1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,67.5,5e-18,SUBFAMILY NOT NAMED,NULL; HEMOLYSIN-RELATED,NULL;
DUF21,Domain of unknown function DUF21; seg,NULL,CUFF.6515.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13070.1 | Symbols:  | CBS domain-containing protein / transp...   144   3e-35
AT1G55930.1 | Symbols:  | CBS domain-containing protein / transp...   142   2e-34

>AT3G13070.1 | Symbols:  | CBS domain-containing protein /
           transporter associated domain-containing protein |
           chr3:4191511-4195112 REVERSE LENGTH=661
          Length = 661

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 101/157 (64%), Gaps = 7/157 (4%)

Query: 72  LVTSGKDLSGTKSSNDVSEEDMKFPKFVGELVKKGIVLAATVCGVLMFGCERAFAMEGLV 131
           L +S +   G++  +D  E++++  K    L+K+GIV+ A VCGV ++GC++  A  G+V
Sbjct: 74  LFSSSQCHEGSQRKSDSGEKELESIKV---LLKRGIVIGALVCGVFLYGCQKVLASAGVV 130

Query: 132 S----VMEQSKVFFRNAWPKVLPVLQIFKEQGXXXXXXXXXXXXXXMAETSITTLWPWKV 187
                V  QS V F+NA PK+  VL + +EQG              MAETSITTLWPWKV
Sbjct: 131 EAGYEVFGQSVVLFKNALPKIYQVLTVLREQGLILAALLSLSAFFSMAETSITTLWPWKV 190

Query: 188 RELANNDSENGVFKLLRSDVTRFLTTILIGTTYSPLA 224
           RELA  + ENGVF++LRSDVTRFLTTILIGTT   +A
Sbjct: 191 RELAEKEPENGVFRMLRSDVTRFLTTILIGTTVVNIA 227


>AT1G55930.1 | Symbols:  | CBS domain-containing protein /
           transporter associated domain-containing protein |
           chr1:20918895-20922133 FORWARD LENGTH=653
          Length = 653

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 101/168 (60%), Gaps = 7/168 (4%)

Query: 58  GSDFKPFGRCDMRCLVTSGKDLSGTKSSNDVSEEDMKFPKFVGELVKKGIVLAATVCGVL 117
           G DF    RC    L  +G  +  ++  +D +E+       +  L+K+GIVL A VCGVL
Sbjct: 61  GCDFSH--RCQFVVLSATGDHVGISQKHSDSTEK----VDSIRILLKRGIVLGAVVCGVL 114

Query: 118 MFGCERAFAMEGLVSV-MEQSKVFFRNAWPKVLPVLQIFKEQGXXXXXXXXXXXXXXMAE 176
            +GC +  A   +V V   +S +  +NAWPK   VL++ +EQG              MAE
Sbjct: 115 FYGCGKVLASTSVVDVAFSKSILLLKNAWPKTSQVLKVLREQGLILAVLLGLSAFFSMAE 174

Query: 177 TSITTLWPWKVRELANNDSENGVFKLLRSDVTRFLTTILIGTTYSPLA 224
           TSITTLWPWKVRELA  + ENGVF++LRSDVTRFLTTILIGTT   +A
Sbjct: 175 TSITTLWPWKVRELAEKEPENGVFRMLRSDVTRFLTTILIGTTVVNIA 222